Gene Strop_4492 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_4492 
Symbol 
ID5060982 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp5082174 
End bp5083736 
Gene Length1563 bp 
Protein Length520 aa 
Translation table11 
GC content70% 
IMG OID640476759 
Productundecaprenyl-phosphate galactose phosphotransferase 
Protein accessionYP_001161298 
Protein GI145597001 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2148] Sugar transferases involved in lipopolysaccharide synthesis 
TIGRFAM ID[TIGR03022] Undecaprenyl-phosphate galactose phosphotransferase, WbaP
[TIGR03025] exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.348554 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACGACAA GCCTCCAGCG CCCGGTAACC AACGGAGGCC GGAGCAGAAC CGTGCGGCAC 
GTCGACAGCT TCGAAATCCA GCCGCCGACA CCGCCGTCCC ACAACGGCGT ACCTCGGTCG
GCCTGGGCCC GCAGCCACCG CCGGGTCTCC CGTTGGCACC GCCCCTACAC CGCGCTCCTG
GTTCTGCTGG ACTTCGCCGC CGCCGCCTTC GCGAGCTTCA CCGCTATCCG CGCCTTCGAC
CAGGCGCGGG CCGGGTTCTA CAACGATCCG GCCTGGTTCT ACACCCTGGC ATGCGTGCTG
CTGCCGCTCG GCTGGGTGGT GATCCTCTGG TTCAACGGCT CCTACGATCG GCGGTACCTG
GGCCTCGGCC CGGATGAGTT CAAGCGTGTT CTCCGCGCCG GCGTGGCGGT CTGCGCGACG
GTCTCCTTCC TGGCGTTCGC CACCAAGACC GACCTGTCCC GATATTCGGT CGGAACCGCG
TTACTCCTCG CTCTGCTGCT GATCCTCCTG GTCCGGATCC TGGCCCGATT CGTGCTGCAC
GTGATCCGGC GCAACGCCGG CCGGGCCGGC CTGGCCGGCC ACCGAATGGT CCTGGTAGGC
ACCCTGCCGG AGTGCCTGGA GGTCCACCGC CAGGTCACCC GCAGCCCCGC CGCCGGCCTG
GTGCCGGTCG CCATCCACAT CACCGACGGC TACGCGGCTG CCCGGGGTGT GGAGACCCCG
GTCCCGGTCT ACGCGGGGCG CGACCTCCTC GCCCTGGTTC GCGAGGTCGG CGGCGACACG
ATCGCGGTCT GCGGGTCGGC CAGCGCCGAG CCCGGCGAGC TGCGCCGGAT GGCCTGGCAG
CTCGAAGGCT CCGGAGTCGA TCTGGCCGTG GTCCCGCAGC TGACCGACAT CGCCGGGCCC
CGGGTACACA TCCGGCCGAT CGAGGGCCTG CCGCTGCTGC ACGTGGAGGA GCCGACCCTC
TCCGGTCCGG CGCTGCTGGC GAAGAATCTG CTCGACCGGG TGGCCGCCGG CCTCGGCCTG
CTGATCCTGC TACCGGTCTT CCTCGCGATC GCGATCTCGA TCCGGATCTC CGACCGGGGT
CCGGTCTTCT TCCGGCAGCC CCGGGTGGGC CACGAGGGGC GAACCTTCCG GGTCTGGAAG
TTCCGCACCA TGTACGTGGA TGCCGAGGAG CGGCTGGCCA GCCTGGTTGA CCAGAACGAG
ACCGACGGCA TGCTGTTCAA GATGAGGCGG GACCCGCGGG TCTTCCCGGT GGGCCGCTTC
CTGCGCGCCT CGTCCCTGGA TGAGCTGCCC CAGCTGATCA ACGTGCTGAA GGGTGAGATG
TCGCTGGTCG GGCCCCGCCC GCTGCCCGCC GACGACGGTG ACTTCCTCGG CGACGTACGC
CGGCGCCTCC TGGTCAAACC TGGAATTACC GGCCTCTGGC AGGTCTCCGG CCGCTCTGAC
CTCTCCTGGG ACGAGGCGGT CCGCCTTGAC CTCTACTACG TCGACAACTG GTCGTTGGCG
TACGACCTGA GCATCCTGTG GCGCACGGTC GGCGTGGTGC TCGCCCGCAA GGGCGCGTAC
TAG
 
Protein sequence
MTTSLQRPVT NGGRSRTVRH VDSFEIQPPT PPSHNGVPRS AWARSHRRVS RWHRPYTALL 
VLLDFAAAAF ASFTAIRAFD QARAGFYNDP AWFYTLACVL LPLGWVVILW FNGSYDRRYL
GLGPDEFKRV LRAGVAVCAT VSFLAFATKT DLSRYSVGTA LLLALLLILL VRILARFVLH
VIRRNAGRAG LAGHRMVLVG TLPECLEVHR QVTRSPAAGL VPVAIHITDG YAAARGVETP
VPVYAGRDLL ALVREVGGDT IAVCGSASAE PGELRRMAWQ LEGSGVDLAV VPQLTDIAGP
RVHIRPIEGL PLLHVEEPTL SGPALLAKNL LDRVAAGLGL LILLPVFLAI AISIRISDRG
PVFFRQPRVG HEGRTFRVWK FRTMYVDAEE RLASLVDQNE TDGMLFKMRR DPRVFPVGRF
LRASSLDELP QLINVLKGEM SLVGPRPLPA DDGDFLGDVR RRLLVKPGIT GLWQVSGRSD
LSWDEAVRLD LYYVDNWSLA YDLSILWRTV GVVLARKGAY