Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_4491 |
Symbol | |
ID | 5060981 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | + |
Start bp | 5081038 |
End bp | 5081898 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640476758 |
Product | DNA-(apurinic or apyrimidinic site) lyase |
Protein accession | YP_001161297 |
Protein GI | 145597000 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0266] Formamidopyrimidine-DNA glycosylase |
TIGRFAM ID | [TIGR00577] formamidopyrimidine-DNA glycosylase (fpg) |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.20817 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCCCGAAC TACCAGAGGT GGAGGCGCTC ACCGTCTACC TGCGCCAACG CGCCGTCGGC CGACGGGTCG ACCGGCTGGA GATCTCGGCG ATCAACGCCC TGAAGACGTA CGACCCGGCG ATCACGGCCG CGGCCGGCCA ACCGGTCGTC CACGCCCAGC GACACGGCAA GTTCCTCGAC CTGGTGCTCG GCGCTGACCT GCACCTGGTC GTTCACCTGG CCCGCGCCGG CTGGCTGCAC TTCCGGGAGG AGTTCTCGTC CCGCACCCCG CTGCGCCCCG GCAAGGGCCC GGTGGCGCTG CGGGCCCGTC TCGACGACGG CTCCGGGTTC GACCTGACCG AGGCCGGCAC CCAGAAGAGT CTCGCCGTCT ACCTGGTGAC CGATCCGGCG ACGGTGCCCG GGGTGGCCCG ACTTGGTCCG GACGCGCTCG CCGTGGACCC GGCCACCTTC GCCGACCGGC TCCGTAGCCG CAAGGGTCAG GTCAAGGGGG TGCTCACCGA TCAGACGGTG CTCGCCGGGG TGGGTAACGC GTACTCTGAT GAGATCCTGC ACACGGCGCG ACTGTCACCG TTCGCGCTGA CCACCCGGCT GACCGACGAA CAACTCGCCA CCCTGCACGC GGCCACCCGG GACGTGCTCG GCGACGCGGT GTCCCGATCG GTGGGGCAAC GGGCCGCGGA GCTCAAGGGC GAGAAGCGCT CCGGCCTGCG GGTGCACGCC CGAACCGGGT TACCCTGCCC AGTCTGCGGC GACACGGTAC GGGAGGTCTC GTTCGCTGAC TCCAGCCTCC AGTACTGTCC AGGTTGCCAG ACCGGCGGGA AGCCACTCGC GGACCGACGG TTGTCTCGAA TTGTACGGTG A
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Protein sequence | MPELPEVEAL TVYLRQRAVG RRVDRLEISA INALKTYDPA ITAAAGQPVV HAQRHGKFLD LVLGADLHLV VHLARAGWLH FREEFSSRTP LRPGKGPVAL RARLDDGSGF DLTEAGTQKS LAVYLVTDPA TVPGVARLGP DALAVDPATF ADRLRSRKGQ VKGVLTDQTV LAGVGNAYSD EILHTARLSP FALTTRLTDE QLATLHAATR DVLGDAVSRS VGQRAAELKG EKRSGLRVHA RTGLPCPVCG DTVREVSFAD SSLQYCPGCQ TGGKPLADRR LSRIVR
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