Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_4406 |
Symbol | |
ID | 5060892 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | + |
Start bp | 4985621 |
End bp | 4987165 |
Gene Length | 1545 bp |
Protein Length | 514 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640476669 |
Product | EmrB/QacA family drug resistance transporter |
Protein accession | YP_001161212 |
Protein GI | 145596915 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.853367 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGTTCAAC ACACGATCAC CCCCCCATCG TCCCCTTCCA GTCACCGGCG GCGGCTGCCT TACCGGTACT GGGTCGCCAT CGTCTATGTG CTGGGCCTGT TCGTGGAGAT CATGGACACC TCGATCGTCA ACGTGGCGGT TCCCGCCTTG GCCGCCGAGT TCGAGACGAC GCCGAATCAC ACGTACTGGG CGGTGTTGGG CTATCTGCTG TCACTGGCCC TGTTCATACC CGCTTCAGGC TGGATCGGTG ACCGCTTCGG CTCCAAGCGC GTCTTCCTCG TCGCCCTCGC CCTCTTCACC GTGGCTTCGG CCCTGTGCGG CCTGGCCCAA ACGCTGGACC AACTCATCGC CTTCCGGATC CTGCAGGGTG TGGGCGCTGG CATGCTGACC CCGGTGGGTG GGGCCATGCT GTACCGGGCC TTCCCACAGT CGCAACGCGC CAAGGCCGCC ACCGCCGTGT TCGGCGTTGC CGTGCTTGCT CCCGCCATGG GCCCGGTGCT CGGCGGACTG CTGGTCGACA CAGCGTCGTG GCGGTGGATC TTCTACATCA ACATTCCCCT CGGCATTCTC ACCATGGCCC TGGCCGCCAC CGTGCTGGTG GAGCATCGTG AGCCCCACGC CCACCGCTTC GACATCGCCG GGTTCGTGCT GGGAGGTGCG GCCCTCACCA CGACGCTCTA CGGGCTGTCG CTCGGCCCGA CGCTGGGGTG GACCTCACCC ACCATCGTGG CTGCCCTGAT CTGCGCTCCG CTGTTGGCGG TCGCCTTCGT CATGGTCGAG CGCACCAGGT CCGAGCCCTT GGTGCAGGTG GCGCTGTTCA AGGATCCGAT GTTCCGTATC GGCAACATCG CCGGCAGTTT CCTCAGCGGG GGCTACCTCG GCTTGATCTT CCTGCTGCCG TTGTTCCTCC AGGGCCCCCA GGGTCAATCC GCACTCCACA GCGGCCTGAT CCTGCTACCC CAGTCGGTCG GAGCCCTCGT CTCGTCGCAG ATTGCCGGCC GTTGGTGGTA CCGCCACTAC GGACCCCGCC CGCTCATGCT GTACGGGGCG CTCCTGGCCG CGGCCAGTGG CGTCGCCTTC CTCGCCGTCG GGGCCGACAC CGACCCCCTG GTCACGGCCG CTCTACTGGG GCTACGGGGC CTGGCCATCG GACCGGTGTT CATCGCCCTC CAGACCGCCA CCTACGCCAC CATCAGCCCG GCCGCGACCG GGCAGGCCGT CGCCATCTAC AACACCCAAC GTCAGGTCAG CGCTGCGGTC GGTATCGCCC TGGGGGCGGC ATGGCTCACC GCCCGGACCC CGAACAGCGC CGAGGCCGTC GACACGGTGT CGGCCTTCCA CGAATCCTTC GTGCTGGTCA GCATTCTCCT ACTTGTCGGC GCGTTGATTT CAGCCCGGAT CAAGAACGCC GACGCTCGAG CCACCATGGA TCCGCCACCC GAACCACCTA CCCACACGGC AGGAGAAGAG TCGGACCGGA CAGCGCAGCT ATCCGTTCAT GCAGCAGATG GTGCCGGCGC TCACCCACCT CGCTCGAGCA CCTGA
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Protein sequence | MVQHTITPPS SPSSHRRRLP YRYWVAIVYV LGLFVEIMDT SIVNVAVPAL AAEFETTPNH TYWAVLGYLL SLALFIPASG WIGDRFGSKR VFLVALALFT VASALCGLAQ TLDQLIAFRI LQGVGAGMLT PVGGAMLYRA FPQSQRAKAA TAVFGVAVLA PAMGPVLGGL LVDTASWRWI FYINIPLGIL TMALAATVLV EHREPHAHRF DIAGFVLGGA ALTTTLYGLS LGPTLGWTSP TIVAALICAP LLAVAFVMVE RTRSEPLVQV ALFKDPMFRI GNIAGSFLSG GYLGLIFLLP LFLQGPQGQS ALHSGLILLP QSVGALVSSQ IAGRWWYRHY GPRPLMLYGA LLAAASGVAF LAVGADTDPL VTAALLGLRG LAIGPVFIAL QTATYATISP AATGQAVAIY NTQRQVSAAV GIALGAAWLT ARTPNSAEAV DTVSAFHESF VLVSILLLVG ALISARIKNA DARATMDPPP EPPTHTAGEE SDRTAQLSVH AADGAGAHPP RSST
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