Gene Strop_4406 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_4406 
Symbol 
ID5060892 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp4985621 
End bp4987165 
Gene Length1545 bp 
Protein Length514 aa 
Translation table11 
GC content67% 
IMG OID640476669 
ProductEmrB/QacA family drug resistance transporter 
Protein accessionYP_001161212 
Protein GI145596915 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.853367 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGTTCAAC ACACGATCAC CCCCCCATCG TCCCCTTCCA GTCACCGGCG GCGGCTGCCT 
TACCGGTACT GGGTCGCCAT CGTCTATGTG CTGGGCCTGT TCGTGGAGAT CATGGACACC
TCGATCGTCA ACGTGGCGGT TCCCGCCTTG GCCGCCGAGT TCGAGACGAC GCCGAATCAC
ACGTACTGGG CGGTGTTGGG CTATCTGCTG TCACTGGCCC TGTTCATACC CGCTTCAGGC
TGGATCGGTG ACCGCTTCGG CTCCAAGCGC GTCTTCCTCG TCGCCCTCGC CCTCTTCACC
GTGGCTTCGG CCCTGTGCGG CCTGGCCCAA ACGCTGGACC AACTCATCGC CTTCCGGATC
CTGCAGGGTG TGGGCGCTGG CATGCTGACC CCGGTGGGTG GGGCCATGCT GTACCGGGCC
TTCCCACAGT CGCAACGCGC CAAGGCCGCC ACCGCCGTGT TCGGCGTTGC CGTGCTTGCT
CCCGCCATGG GCCCGGTGCT CGGCGGACTG CTGGTCGACA CAGCGTCGTG GCGGTGGATC
TTCTACATCA ACATTCCCCT CGGCATTCTC ACCATGGCCC TGGCCGCCAC CGTGCTGGTG
GAGCATCGTG AGCCCCACGC CCACCGCTTC GACATCGCCG GGTTCGTGCT GGGAGGTGCG
GCCCTCACCA CGACGCTCTA CGGGCTGTCG CTCGGCCCGA CGCTGGGGTG GACCTCACCC
ACCATCGTGG CTGCCCTGAT CTGCGCTCCG CTGTTGGCGG TCGCCTTCGT CATGGTCGAG
CGCACCAGGT CCGAGCCCTT GGTGCAGGTG GCGCTGTTCA AGGATCCGAT GTTCCGTATC
GGCAACATCG CCGGCAGTTT CCTCAGCGGG GGCTACCTCG GCTTGATCTT CCTGCTGCCG
TTGTTCCTCC AGGGCCCCCA GGGTCAATCC GCACTCCACA GCGGCCTGAT CCTGCTACCC
CAGTCGGTCG GAGCCCTCGT CTCGTCGCAG ATTGCCGGCC GTTGGTGGTA CCGCCACTAC
GGACCCCGCC CGCTCATGCT GTACGGGGCG CTCCTGGCCG CGGCCAGTGG CGTCGCCTTC
CTCGCCGTCG GGGCCGACAC CGACCCCCTG GTCACGGCCG CTCTACTGGG GCTACGGGGC
CTGGCCATCG GACCGGTGTT CATCGCCCTC CAGACCGCCA CCTACGCCAC CATCAGCCCG
GCCGCGACCG GGCAGGCCGT CGCCATCTAC AACACCCAAC GTCAGGTCAG CGCTGCGGTC
GGTATCGCCC TGGGGGCGGC ATGGCTCACC GCCCGGACCC CGAACAGCGC CGAGGCCGTC
GACACGGTGT CGGCCTTCCA CGAATCCTTC GTGCTGGTCA GCATTCTCCT ACTTGTCGGC
GCGTTGATTT CAGCCCGGAT CAAGAACGCC GACGCTCGAG CCACCATGGA TCCGCCACCC
GAACCACCTA CCCACACGGC AGGAGAAGAG TCGGACCGGA CAGCGCAGCT ATCCGTTCAT
GCAGCAGATG GTGCCGGCGC TCACCCACCT CGCTCGAGCA CCTGA
 
Protein sequence
MVQHTITPPS SPSSHRRRLP YRYWVAIVYV LGLFVEIMDT SIVNVAVPAL AAEFETTPNH 
TYWAVLGYLL SLALFIPASG WIGDRFGSKR VFLVALALFT VASALCGLAQ TLDQLIAFRI
LQGVGAGMLT PVGGAMLYRA FPQSQRAKAA TAVFGVAVLA PAMGPVLGGL LVDTASWRWI
FYINIPLGIL TMALAATVLV EHREPHAHRF DIAGFVLGGA ALTTTLYGLS LGPTLGWTSP
TIVAALICAP LLAVAFVMVE RTRSEPLVQV ALFKDPMFRI GNIAGSFLSG GYLGLIFLLP
LFLQGPQGQS ALHSGLILLP QSVGALVSSQ IAGRWWYRHY GPRPLMLYGA LLAAASGVAF
LAVGADTDPL VTAALLGLRG LAIGPVFIAL QTATYATISP AATGQAVAIY NTQRQVSAAV
GIALGAAWLT ARTPNSAEAV DTVSAFHESF VLVSILLLVG ALISARIKNA DARATMDPPP
EPPTHTAGEE SDRTAQLSVH AADGAGAHPP RSST