| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_4405 |
|---|
| Symbol | |
|---|
| ID | 5060891 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 4984280 |
|---|
| End bp | 4985341 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640476668 |
|---|
| Product | chitinase |
|---|
| Protein accession | YP_001161211 |
|---|
| Protein GI | 145596914 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3179] Predicted chitinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAGAC TTCGCGCCCT CGCCGCGCTG GCGGTGTTGA CCATCGCCGG CACGCTGATG
GCGATCATCC CGGCCGCGAC AGCCTCAGCC GCGACCTGCG CGACATCCTG GCATTCCTCC
GCCGTCTACA CCGGAGGAAT GCAGGTCTCC CACAACGGCC GCAACTACCA GGCGAAGTGG
TGGACCCAAA ACGAAGCTCC GCCCGGCACC AGCGGCGTCT GGCAAGATCT CGGCGCCTGC
GGCGGATCCA CGCCACCCCC GGGCGGAACC TGCAACCATC CGAACTGGGT TGCCGGCACC
TGGTACCCCG CCGGCAGCGT CGTGCGCTAC ACGAACGGCC TCTACTACAT CGCCGAACAT
GACAACCCGG GGTACGACCC CACCATCAGC ACGTGGTACT GGGATCCGTA CAGCTGTGGC
AGTCCACCCC CCACCGACCC GGGTGACTTC GTGGTTACCG AGGCGCAGTT CAACCAGATG
TTTCCGGGCC GAAACTCCTT CTACACCTAC GCCGGGCTGG TCGCAGCCCT CAACGCCTAC
CCGGCCTTCA CGAACACCGG CAATAGCACC GTGCGGCGGC AAGAAGCCGC GGCCTTCCTG
GCGAACGTGC ACCACGAGAC GGGTGGCCTC ATCCACATCG TGGAACAGAA CCCGGCGAAC
TATCCGCACT ACTGCGACTC CGGACAGCCC TACGGCTGCC CCGCCGGTCA GGCCGCCTAC
TACGGGCGCG GGCCGATCCA GCTCAGCTGG AACTTCAACT ACAACGCAGC GGGCAACGCC
CTCGGACTGC CCCTGCTGAC CAACCCCTGG CTGGTGGAGA ACGACGCCGC GGTGGCCTGG
AAGACCGCCC TCTGGTACTG GATGACTCAG AACGGACCGG GCTGGATGAC AGCTCACAGC
GCGATGGTCA ACGGCGCCGG GTTCGGTGAG ACCATCCGCA GCATCAATGG CTCGCTCGAG
TGCAACGGCG GCAATCCCGC GCAGGTACAG AGCCGCGTCA ATCGGTACCA ACAGTTCGCT
GGCCTCCTCG GGGTGCCACC CGGGGCCAAC CTGTACTGCT GA
|
|---|
| Protein sequence | MSRLRALAAL AVLTIAGTLM AIIPAATASA ATCATSWHSS AVYTGGMQVS HNGRNYQAKW
WTQNEAPPGT SGVWQDLGAC GGSTPPPGGT CNHPNWVAGT WYPAGSVVRY TNGLYYIAEH
DNPGYDPTIS TWYWDPYSCG SPPPTDPGDF VVTEAQFNQM FPGRNSFYTY AGLVAALNAY
PAFTNTGNST VRRQEAAAFL ANVHHETGGL IHIVEQNPAN YPHYCDSGQP YGCPAGQAAY
YGRGPIQLSW NFNYNAAGNA LGLPLLTNPW LVENDAAVAW KTALWYWMTQ NGPGWMTAHS
AMVNGAGFGE TIRSINGSLE CNGGNPAQVQ SRVNRYQQFA GLLGVPPGAN LYC
|
|---|
| |