| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_4402 |
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| Symbol | |
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| ID | 5060888 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | - |
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| Start bp | 4979791 |
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| End bp | 4980936 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 640476665 |
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| Product | sigma-70 region 2 domain-containing protein |
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| Protein accession | YP_001161208 |
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| Protein GI | 145596911 |
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| COG category | [K] Transcription |
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| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.270648 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.805777 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAATGGGG AACAGCTGCG GGACCTCGTA CCAGCGGTGA TCGGCATCCT CGTCCGGCGC
GGTGCGGATT TCGCGTCGGC CGAGGATGCC GTGCAGGACG CCCTGGTCGA GGCGGTGCGC
GGCTGGCCGG ACAGTCCGCC GCAGGACCCC AGAGGCTGGT TGATCACCGT GGCCTGGCGC
AAGTTCCTCG ACGCGGCCCG CGCCGACACC TCCCGGCGCC GGCGCGAGGT ACGCGTCGAG
GGCGAGCCCG CACCGGGGCC GGTCGAGGCG GTGGACGACA CGCTTCAGCT GTACTTCTTG
TGCGCTCACC CCTGTCTGAC ACCGGCCTCG TCCGTCGCGC TCACGCTGCG CGCGGTCGGC
GGCCTGACCA CGCGTCAGAT CGCGCGGGCC TACCTCGTGC CGGAGGCGAC CATGGCCCAG
CGGATCAGCC GGGCCAAGCG TACGGTCTCG GGTGTCCGCC TCAACCAGCC CGGTGATGTC
GCCACGGTGG TGCGCGTGCT CTATCTGGTC TTCAATGAGG GCTACTCCGG GGATGTCGAC
CTTGCCGCCG AAGCGATCCG GCTCACTCGT CAACTCGCTG CCAAGATTAG CCACGAGGAG
GTCGCAGGCC TGCTGGCGCT GATGCTGCTG CACCACGCGC GACGGCCGGC GCGCACCGAC
TCCGACGGCC GGCTCGTGCC TCTTGCCGAG CAGGACCGCA GCCGGTGGAA CCGCCACCTG
ATCGCTGAGG GCGTCGAGCT GCTCCAGAAA GCCCTCGCCC GGGACCGGCT GGGAGAGTTC
CAGGCCCAGG CCGCCATCGC CGCACTGCAC GCCGACGCCC GGACGGTCGA GGAGACCGAC
TGGGTGCAGA TCGTCGAGTG GTACGACGAC CTGGTGCGCC TGACCGACAG CCCGGTGGTT
CGCCTTAACC GGGCGGTCGC CCTCGGGGAG GCCGACGGCC CGAGGGCCGG CCTGGCGGCC
CTGGCCGGGC TCGACCCCGC CCTGCCCCGG CACACCGCCG TCGCGGCCTA CCTGCACGAG
CGGGCGGGCG ACCCGGTGAC CGCGGCCCGG CTCTACGCCG AGGCCGCCCG CTCGGCACCG
AGCCTCCCCG AGCGCGACCA CCTCATCCGA CAGGCCGCCC GACTCAACTC GCCACCGCGT
CGTTGA
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| Protein sequence | MNGEQLRDLV PAVIGILVRR GADFASAEDA VQDALVEAVR GWPDSPPQDP RGWLITVAWR
KFLDAARADT SRRRREVRVE GEPAPGPVEA VDDTLQLYFL CAHPCLTPAS SVALTLRAVG
GLTTRQIARA YLVPEATMAQ RISRAKRTVS GVRLNQPGDV ATVVRVLYLV FNEGYSGDVD
LAAEAIRLTR QLAAKISHEE VAGLLALMLL HHARRPARTD SDGRLVPLAE QDRSRWNRHL
IAEGVELLQK ALARDRLGEF QAQAAIAALH ADARTVEETD WVQIVEWYDD LVRLTDSPVV
RLNRAVALGE ADGPRAGLAA LAGLDPALPR HTAVAAYLHE RAGDPVTAAR LYAEAARSAP
SLPERDHLIR QAARLNSPPR R
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