| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_4384 |
|---|
| Symbol | |
|---|
| ID | 5060870 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 4959803 |
|---|
| End bp | 4960645 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640476647 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001161190 |
|---|
| Protein GI | 145596893 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.548465 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATAG ATGTTCAGCG GGCACCGGGG CAGATCCGGG AGCCGGCGAT CCAGGTGCGG
GGCCTGCACA AGTCGTACCA GGAGCTGCGG GTGCTCCGCG GCGTCGACTT CGACGTCGCG
CGGGGAAGTG TCTTCGCCCT GCTCGGCTCA AACGGGGCGG GCAAGACCAC GGTGGTGCGG
ATCTTGTCTA CACTGCTCCG CTTGGATGCG GGATCGGCCA GCGTCAACGG CTTCGACGTC
GTCGCGCAGG CGGCGAAGGT GCGTGCGTCG ATCAGCCTGA CTGGGCAGTT CGCCGCGGTC
GACGAGGTCC TCAGCGGGCG GGAGAATCTG ATCCTGGTCG CCCGGCTGCG GCGACAGCGG
GAGCCGGGGC GGGTCGCGGA CGACCTGCTG GTCCGCTTCG CGCTCACGGA CGCGGCCAAC
CGGAGGGTGG CGACGTACTC GGGCGGGATG CGTCGTCGTC TCGACATCGC GATGAGTCTG
GTCGGGAACC CACCGGTGAT TGTCCTCGAC GAGCCGACGG TCGGGCTGGA CCCGCAGGCG
CGGCTGGAGG TGTGGCAAGC CGTTCGAGAA CTCGTCGCCC AGGGTACGAC GGTGCTGCTC
ACCACGCAGT ATCTCGACGA GGCCGAGCAG CTCGCGGACC GGATCGCGGT CCTGCACGAG
GGGCGCGTCA TCGCCAACGG CACGCTCACC GAGCTCCGGC GGCTGTTCCC GCCCGCCACC
GTGGAGTACG TCGAAAAGCA GCCGTCCCTG GAGGACATCT TCCTGGCCAT CGTCAGTGAC
GAGGGCACCA CCGTGACGAC AGCTTCAGCC CCGCCGGTAC GAGCAGCCAA GGACCCCCGA
TGA
|
|---|
| Protein sequence | MSIDVQRAPG QIREPAIQVR GLHKSYQELR VLRGVDFDVA RGSVFALLGS NGAGKTTVVR
ILSTLLRLDA GSASVNGFDV VAQAAKVRAS ISLTGQFAAV DEVLSGRENL ILVARLRRQR
EPGRVADDLL VRFALTDAAN RRVATYSGGM RRRLDIAMSL VGNPPVIVLD EPTVGLDPQA
RLEVWQAVRE LVAQGTTVLL TTQYLDEAEQ LADRIAVLHE GRVIANGTLT ELRRLFPPAT
VEYVEKQPSL EDIFLAIVSD EGTTVTTASA PPVRAAKDPR
|
|---|
| |