Gene Strop_4338 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_4338 
Symbol 
ID5060823 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp4915025 
End bp4915927 
Gene Length903 bp 
Protein Length300 aa 
Translation table11 
GC content68% 
IMG OID640476600 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001161144 
Protein GI145596847 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.244803 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.769148 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACGC TGTCCGAAGC GGTCGGCCCG GCTGAGCCAA ACGACGCGCC ACCGCGCGGT 
CTGTGGCGGC AGGGGCTGAC CGTCTTCTGC GAGAACCGGC TTGCCCTGGT GGGACTGGGC
CTGTTCGTCC TGCTGGCCGG GGTCTGTTTC CTCGGACCGC TGGTCTACCA CACCGACCAG
GTGCACACGG ACCTCACCGC CGTGCACCTG GCCCCGGGAG AGCAGGGACA TCCGCTCGGC
ACCGACGGGG TCGGCTACGA CCAGTTGGGG CGGCTGATGC TCGGCGGCCA GACCTCCATC
ATCGTCGGAC TGGCCGCCGG GGTGCTCGCC ACCATCGTTG GCACGCTGCT GGGTGCCATC
GCCGGCTTCT TCGGCGGCTG GGTGGACGCC GCGGTGATGC GCGTGGTCGA CGCGATGATG
TCGATCCCCT CGTTGTTCCT GTTCATGCTG CTCGCCGCCA TCGTCACGCC GAGCGCGCCG
ATGCTCATCC TCATCATCGG TGCCTTCGCC TGGCTGGGCC CGGCCCGGCT CGTGCGGGGC
GAGGCACTGA CGCTGCGCTC ACGTGAGTAC GTCCAGGCGA TGCGTGGGAT GGGTGGCACG
GGTGGCCGTG CGGTCCGCCG ACACATCATC CCCAACGCCA TCGGCACGGT AATCGTCAAC
GCCACCTTCC AGGTCGCCGA CGCGATCCTC TACGTCGCCT ACCTGTCCTT CCTTGGCCTC
GGCATCCCCC CACCGGCCGC GAACTGGGGT GGCATGCTCT CCGATGGTCT CGCGGACACC
TACAGCGGCC ACTGGTGGCT GTTGTACCCG CCCGGGATCG CCATCATCCT CATCGTCCTC
GCCTTCAACT TCATCGGTGA CGGACTCAGG GACGCCTTCG AGGTTCGCCT CCGGCGACGC
TAG
 
Protein sequence
MSTLSEAVGP AEPNDAPPRG LWRQGLTVFC ENRLALVGLG LFVLLAGVCF LGPLVYHTDQ 
VHTDLTAVHL APGEQGHPLG TDGVGYDQLG RLMLGGQTSI IVGLAAGVLA TIVGTLLGAI
AGFFGGWVDA AVMRVVDAMM SIPSLFLFML LAAIVTPSAP MLILIIGAFA WLGPARLVRG
EALTLRSREY VQAMRGMGGT GGRAVRRHII PNAIGTVIVN ATFQVADAIL YVAYLSFLGL
GIPPPAANWG GMLSDGLADT YSGHWWLLYP PGIAIILIVL AFNFIGDGLR DAFEVRLRRR