| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_4291 |
|---|
| Symbol | |
|---|
| ID | 5060776 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 4860836 |
|---|
| End bp | 4861891 |
|---|
| Gene Length | 1056 bp |
|---|
| Protein Length | 351 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640476553 |
|---|
| Product | glycine betaine/L-proline ABC transporter, ATPase subunit |
|---|
| Protein accession | YP_001161097 |
|---|
| Protein GI | 145596800 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1125] ABC-type proline/glycine betaine transport systems, ATPase components |
|---|
| TIGRFAM ID | [TIGR01186] glycine betaine/L-proline transport ATP binding subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.603453 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGACGCTA CCCCGCGGGG ATCCGCTGAC GACGAGGCGC GTGCGGCATC GATCTCCCTC
GATAGTATAG GCAAACGCTA CCCGGACGGC ACCGAGGCGG TCCGCGAACT GACCCTGGAG
GTCGCCGCCG GCGAGCTGGT GGTGCTGATC GGCCCCTCCG GCTGCGGCAA GTCGACCGTG
CTACGGATGG TGAACCGCCT CATCGAGCCG ACCGCCGGCC GGATCCTGCT CGACGGGGCA
GACGTCACAC GGGTTGACCC GGTCCGGCTG CGCCGCCGCA TCGGCTACGT GATCCAGAAT
GTCGGCCTCT TCCCGCACCA GACCATCAGC GCGAACGTCG CCACCGTGCC GCAGCTGCTC
GGCTGGCCCC GGGACCGCCG CCGGCAGCGA GTCACCGAGC TGTTGGAACT GGTCGGTCTG
GACCCGGCCC AGTTCGGCGC CCGATACCCG CACGAACTCT CCGGCGGTCA GCGGCAGCGG
GTGGGCGTGG CCCGGGCACT CGCCGCGGAC CCGGTGGTCC TGCTGATGGA CGAGCCCTTC
TCCGCGGTCG ACCCGATCGT CCGGACCCGG CTCCAGGAGG AGTTCCTGCG GCTACAGGCC
GAGGTCCGCA AGACCATCGT GCTGGTGACG CACGACCTCG ATGAGGCGGT TCGGCTGGGC
GACCGGATCG CGGTGCTCTC CGAGGGCGGT CGCCTGGAGC AGTACGACAC CCCGGCTGCC
GTGCTCGGCG CGCCGGCCAC CCCGTTCGTC CGGGAGTTCG TCGGTGCCGA CCGAGGCATC
CGGCGCCTGG CCGTCACCCC GGTCACCCGG GAGACGGTCG AGCCGGTCTC CGCCACCCCG
ACCGCCGCCG ACCTCCCCAC GGTGCCGCTC GGGGCATCGG CGTACGACGC GCTGGGGGTC
CTGTTGACCT CCACGGCGGA CCGGGTGATG GTGACCGACC AGGAGCAACC CGTGGGTGTC
CTCACCCGAT CTCGGCTGCT CGCCCTGGGC CACTCCGACG ACCAGAGCCG GCCGCCCACC
CCCAACCGGG TGTTCACCCC CGCAGATAGT CGATGA
|
|---|
| Protein sequence | MDATPRGSAD DEARAASISL DSIGKRYPDG TEAVRELTLE VAAGELVVLI GPSGCGKSTV
LRMVNRLIEP TAGRILLDGA DVTRVDPVRL RRRIGYVIQN VGLFPHQTIS ANVATVPQLL
GWPRDRRRQR VTELLELVGL DPAQFGARYP HELSGGQRQR VGVARALAAD PVVLLMDEPF
SAVDPIVRTR LQEEFLRLQA EVRKTIVLVT HDLDEAVRLG DRIAVLSEGG RLEQYDTPAA
VLGAPATPFV REFVGADRGI RRLAVTPVTR ETVEPVSATP TAADLPTVPL GASAYDALGV
LLTSTADRVM VTDQEQPVGV LTRSRLLALG HSDDQSRPPT PNRVFTPADS R
|
|---|
| |