| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_4250 |
|---|
| Symbol | |
|---|
| ID | 5060735 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 4818443 |
|---|
| End bp | 4819648 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640476512 |
|---|
| Product | 4-hydroxyphenylpyruvate dioxygenase |
|---|
| Protein accession | YP_001161056 |
|---|
| Protein GI | 145596759 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins |
|---|
| TIGRFAM ID | [TIGR01263] 4-hydroxyphenylpyruvate dioxygenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.365692 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0823259 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAGG CGATCGACCG ACCCCAGACG AGTGACGAGG TCGACGCCGA CCTGCTGGTC
GGCGCCGTTG ACCACGACAT CAGCCACGAC CCGTTCCCGG TCAAGGGTCT CGACCACGTG
CAGTTCCTGG TCGGCAACGC CAAGCAGGCC GCGCACTACT ACTCCACCGC CTTCGGCATG
ACCTGCGTGG CCTACCGGGG GCCGGAGCAA GGCTACCGGG ATCACGCTCA GTACGTGCTG
ACCAGTGGTT CGGCCCGCTT CGTCCTCACC GGCGCGGTCC GCCCGGACGC GGCCGGTGCC
GAGCAGGTCG CCCGGCACAG CGACGGGGTC TGCGACATCG CGCTGGAGGT CCCCGACGTT
GACGCGGCGC ACGCGCACGC CATCGCCCAG GGCGCGATCA GCCTTGCTGA GCCGTACGAG
GTCAGCGACG AACACGGCAC GGTCCGGCTC GCCGCCATCG CCACGTATGG TGACACCCGC
CACACCCTGG TGGACCGCTC CCGCTACCAC GGCCCGTTCC TACCCGGCTA CGTCGCCCGC
CGACCGATCG TCGACCGCCA GCCAATGATC GACGCTGGCG TCCAGCCGAA GCGCTTCTTC
CAGGCGATCG ACCACGTCGT CGGCAACGTC GAGCTGGGTC GCATGGACGA GTGGGTCGAG
TTCTACCAGC GGGTGATGGG CTTCACCAAC ATGGCGGAGT TCGTCGGCGA CGACATCGCC
ACCGACTACT CGGCGCTGAT GAGCAAGGTC GTCGCCAACG GCACCCGGAA GGTGAAGTTT
CCGCTCAACG AGCCGGCGGT CGCCCGGAAG AAGTCGCAGA TCGACGAATA CCTGGACTTC
TACCAGGGCC CCGGGGCCCA GCACATCGCG GTGGCCACCA ACGACATCCT GGCCAGCGTG
GACGCGATGC GCGCGGCAGG CGTGGACTTC CTGGACACCC CCGACTCGTA CTACGACGAC
CCGGAGCTGC GGGCCCGGAT CGGCGAGGTC CGGGTTCCGA TCGAGGAGCT GAAGGCCCGC
CGGATCCTGG TCGACCGGGA CGAGGACGGC TACCTGCTCC AGATCTTCAC CAACCCGGTG
CAGGACCGCC CGACCGTCTT CTTCGAGCTG ATCGAGCGAC ACGGCTCGCT CGGCTTCGGC
AAAGGCAACT TCAAGGCGCT CTTCGAGGCC ATCGAGCGGG AGCAGGACAA GCGCGGCAAC
CTGTGA
|
|---|
| Protein sequence | MTQAIDRPQT SDEVDADLLV GAVDHDISHD PFPVKGLDHV QFLVGNAKQA AHYYSTAFGM
TCVAYRGPEQ GYRDHAQYVL TSGSARFVLT GAVRPDAAGA EQVARHSDGV CDIALEVPDV
DAAHAHAIAQ GAISLAEPYE VSDEHGTVRL AAIATYGDTR HTLVDRSRYH GPFLPGYVAR
RPIVDRQPMI DAGVQPKRFF QAIDHVVGNV ELGRMDEWVE FYQRVMGFTN MAEFVGDDIA
TDYSALMSKV VANGTRKVKF PLNEPAVARK KSQIDEYLDF YQGPGAQHIA VATNDILASV
DAMRAAGVDF LDTPDSYYDD PELRARIGEV RVPIEELKAR RILVDRDEDG YLLQIFTNPV
QDRPTVFFEL IERHGSLGFG KGNFKALFEA IEREQDKRGN L
|
|---|
| |