Gene Strop_4220 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_4220 
Symbol 
ID5060705 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp4785558 
End bp4786649 
Gene Length1092 bp 
Protein Length363 aa 
Translation table11 
GC content68% 
IMG OID640476482 
ProductABC transporter related 
Protein accessionYP_001161026 
Protein GI145596729 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3839] ABC-type sugar transport systems, ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.886813 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCACGG TTACCTACGC CAAGGCGTCC CGGATCTACC CGGGCACCGA GCGGCCCGCC 
GTCAACCAGC TCGACCTGGA GATCGGCGAC GGCGAGTTCC TGGTCCTGGT CGGCCCCTCC
GGTTGCGGTA AGTCCACCAG CCTGCGCATG CTCGCCGGGC TCGAGGACGT TGACCAGGGT
TCGATCTCCA TCGACGACCG GGACGTCACC CACCTGCCGC CGAAGGCCCG CGACATCGCG
ATGGTCTTCC AGAACTACGC CCTCTACCCG CACATGTCGG TGTACGAGAA CATGGCGTTC
GCCCTCAAGC TACGCAAGAC GCCGAAGGCG GAGATCGACC GGCGGGTCAA GGAGGCGGCG
ACGCTGCTCC AACTGGAGGA GTACCTCGGC CGCAAGCCGA AGGCGCTCTC TGGCGGCCAG
CGCCAGCGGG TGGCAATGGG GCGGGCGATC GTCCGCGAGC CGCAGGTCTT CCTGATGGAC
GAGCCCCTGT CGAACCTCGA CGCCAAGCTG CGGGTGCAGA CCCGTACGCA GATCGCGTCC
CTGCAGTCCA AGCTCGGTGT GACCACCGTC TACGTCACCC ACGACCAGGT CGAGGCCATG
ACGATGGGGC ACCGGGTGGC AGTCCTGCTC GACGGCGAAC TCCAGCAGGT CGACACGCCG
CGGGCGCTCT ACGACACCCC GGCCAACGTC TTCGTCGCCG GCTTCATGGG CTCGCCGGCG
ATGAACATCA AGACCGTGCC GTTGACCGAC AAGGGCGCCG AGTTCGCCGA GATGCACATC
CCGCTCACCC GCGAGCAGGT CGAGGCGGCC CGCGCCGAGG GAGCCGGCGA CAAGATCGTG
GTGGGCTTCC GTCCGGAGGA CTGTGAGCTG GTCAGCCCGA CCGAGGGGGG CCTACCGGTC
ACCGTTGAGC TGGTCGAGGA CCTCGGGTCG GACGCCAACA TCTACGGCCA CGCCGCGCTG
GAAGGCACCA ACGAGCGGTT CGTGGTCCGC ACCGACCGGC GCACCATGCC GAACATGGGC
GGCACCGTGT TCGTCCGGCC GCAGCCTGGA CGCAGCCACA TCTTCAACTC GAAGACCGGC
CTCCGGATCT GA
 
Protein sequence
MATVTYAKAS RIYPGTERPA VNQLDLEIGD GEFLVLVGPS GCGKSTSLRM LAGLEDVDQG 
SISIDDRDVT HLPPKARDIA MVFQNYALYP HMSVYENMAF ALKLRKTPKA EIDRRVKEAA
TLLQLEEYLG RKPKALSGGQ RQRVAMGRAI VREPQVFLMD EPLSNLDAKL RVQTRTQIAS
LQSKLGVTTV YVTHDQVEAM TMGHRVAVLL DGELQQVDTP RALYDTPANV FVAGFMGSPA
MNIKTVPLTD KGAEFAEMHI PLTREQVEAA RAEGAGDKIV VGFRPEDCEL VSPTEGGLPV
TVELVEDLGS DANIYGHAAL EGTNERFVVR TDRRTMPNMG GTVFVRPQPG RSHIFNSKTG
LRI