| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_4217 |
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| Symbol | |
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| ID | 5060701 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | - |
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| Start bp | 4781730 |
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| End bp | 4782971 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 640476478 |
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| Product | sigma-70 region 2 domain-containing protein |
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| Protein accession | YP_001161023 |
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| Protein GI | 145596726 |
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| COG category | [K] Transcription |
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| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.620791 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCGGTCG CCACCGCCTA CGCCGACGAC TGGGGGCGGA TCGTTGCCAT GCTGATCCGG
CTCGCCGGGG ACTGGGAGCT GGCGGAGGAG TGCGCCCAGG ACGCGTTCAC CGCGGCGCTC
ACGCGCTGGC CGACGGAGGG GATACCGGAC CGTCCCGGGG GATGGCTCGC CACCACGGCC
CGCAATCGCG CAGTGGATCG GCTTCGTCGC TCCGCCGTGG AGGCCGGGAA GCTGCGCGAC
GTGTCCCGGC TGGGGGAGCC GGCCCCGGTC GGCTACTTTC CCGACGAACG CCTCGAGCTG
ATGTTCACCT GCGTGCACCC GGCGCTTACC GGCGAGGCGC AGGTCGCGCT CATGCTGCGC
TACCTCGCCG GGCTCCGGAC AGCGGAGATC GCCCGAGCTT TCCTGGTGTC GGAGCACACC
ATGGGGCAAC GGCTGTTCCG TGCGAAGAGC AAGATCCGCC ATGCCGGGAT CCCGTTCCGG
GTCCCGCCGG CCCAGCTGCT GCCGGAGCGA CTGTCGGCCG TGCTCTCGGT GCTCTATCTG
CTGTTCAACG AGGGCTACGC GGCGACGGCC GGCTCGAACC TCGTGACGGC CGGTCTCTCC
GCAGAGGCGA TCCGGCTGGC CCGACTCCTC ACCACCCTTA TGCCGGCTGA GCCCGAAGCC
CGCGGACTAC TCGCGCTCAT GCTGCTGCAC GACGCCCGCC GCCCGTCCCG GGTCGACGAG
CGTGGCGACC TCGTCACCCT GGCCGACCAG GACCGTTCGG CCTGGGACCA CCCCCAGATC
GCCGAAGCGG TCGCCCTACT CGAGCAGGCA CTGGCCCAGC GCCGCCCCGG CGTCTACCAG
GTGCAGGCGG CGATCGCTGC GGTCCACGCC GAGGCACCCG AGGCGGCGGC GACCGACTGG
CCGCAGATCG TCGGACTGTA CGCGCAACTC GTCCGCCTGG CACCCACCCC GGTCGTCGAG
CTCAATCGGG CGGTGGCGGT GGCGATGGCC GACGGGCCCG GAGCCGGACT GGCATTGGTG
GATCGCCTGG CCGCCACTGG AGTGCTCAAC GACTACTACC TGCTGCCGGC GACCCGGGCC
GACCTGCTGC GTCGGCTGGG GCGACACGCC GAGGCGGCGG CCGCCTACCG TCGGGCGCTC
GATCTGTGCG GGACCGACGC CGAGCACCGA TACCTGCTCC GGCGCCTGTG CGAGGTGTCG
GCACCCACCT CGTGGGAAAG CCGTCCAGGG TCGGCCAGAT AG
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| Protein sequence | MAVATAYADD WGRIVAMLIR LAGDWELAEE CAQDAFTAAL TRWPTEGIPD RPGGWLATTA
RNRAVDRLRR SAVEAGKLRD VSRLGEPAPV GYFPDERLEL MFTCVHPALT GEAQVALMLR
YLAGLRTAEI ARAFLVSEHT MGQRLFRAKS KIRHAGIPFR VPPAQLLPER LSAVLSVLYL
LFNEGYAATA GSNLVTAGLS AEAIRLARLL TTLMPAEPEA RGLLALMLLH DARRPSRVDE
RGDLVTLADQ DRSAWDHPQI AEAVALLEQA LAQRRPGVYQ VQAAIAAVHA EAPEAAATDW
PQIVGLYAQL VRLAPTPVVE LNRAVAVAMA DGPGAGLALV DRLAATGVLN DYYLLPATRA
DLLRRLGRHA EAAAAYRRAL DLCGTDAEHR YLLRRLCEVS APTSWESRPG SAR
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