| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_4139 |
|---|
| Symbol | |
|---|
| ID | 5060623 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 4707627 |
|---|
| End bp | 4709093 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640476401 |
|---|
| Product | RNA-directed DNA polymerase |
|---|
| Protein accession | YP_001160946 |
|---|
| Protein GI | 145596649 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3344] Retron-type reverse transcriptase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCAAG ACGCGCCGCT GAATGGCGGT GCTCTGACCG AACCGGCTGG GCCGGTCCGG
CGGGTAGCGG AGATGCAGGC CAAGCTTCAC CGTTGGGCGG CGGCCGGTCC GGGCCGCCGG
TTCGATGACC TGTTCAACCT CGTGCACGAC CCGGCGACGC TGCTTGTGGC GTATAGCCGG
GTCGCGGGCA ACCTGGGAGC CAGAACTGCC GGCGTGGACG GTATGACCGT CGCTGACGTC
GAGCGGCACA TCGGTGTTCC GGGGTTCCTG GACGACCTGC GTGTCCAGGT GAAGACGGGC
ACGTTCCGGC CGCTGCCGGT GCGGGAACGC AAGATCCCGA AACCGGGCGG GTCAGGCAAG
GTCCGCAGAC TGGGTATTCC CACAGTTGCG GACAGGGTCG TGCAGGCGGC GCTGAAGCTC
GTGCTGGAAC CGATCTTCGA GGCCGACTTC CTGCCGGTCT CGTACGGGTT CCGGCCCAAG
CGGCGGGCGC AGGACGCGAT AGCGGAGATC CACTACTACG GCACCCACGG GTACCGGTGG
GTCCTGGACG CGGACATCGA GGCGTGCTTC GACTCGATCG ACCACGTCGC GTTGATGGAC
CGGGTCCGGA CACGGATCAA GGACAAACGC GTTCTGACAC TGGTGAAGGC GTTCCTCAAA
GCCGGGATCC TCACCGAACT CGGTGACCGG CGGGACACCC ACACCGGCAC GCCGCAGGGT
GGCATCCTGT CCCCGTTGTT GGCCAACATC GCGCTGACGG TGCTCGACGA GCATCTGATG
GCCGGGTGGC GGCCGGACGC GACGATGGCC AGTGAGTACC GCCGAGCCCA ACTGCGCAAA
CGCGGCGAAG CGACGTGGCG CCTCGTGCGC TACGCCGATG ACTTCGTCGT CCTCGTCCAC
GGCGGCGAGG ACCACGCACA GGCGTTACGC GAGGACGTCG CGACGATGCT CGCGCCGCTC
GGACTGAGGC TGTCACCAGC CAAGACGAGG GTGGTGCACC TGAGCGACGG GTTTGACTTC
CTGGGGTTTC ACATCCAGTG GCGCCGTAAG CGAGGCACGA ACAAGTGGCA CGTGTACACC
TTCATCGCAA AGCGGCCGAT CCGGTCGCTG AAGGCGAAGG TCCGTGCGCT GACACGCAGG
ACATCACAGC AGGACCTCGG GACCGTGCTG ACCAGACTCA ACCTGGTCGC GCACGGTTGG
GCCAACTACT TCCGGCACGC CGTGGCGAAG AACGTCTTCA GCATGTTAGA CAACTTCATC
TGGAAACGGG TGATACGCAT GCTGATCGCC CGGCACCGCT GGTCGTGGAC GGACGTCCGC
CGACACTTCG TCACCCCTGT CGGGCGGTGG CGACCGATCA GCGCGGGCGA GATCGAGTTG
CGTCCCATCG CGGCGATACC GGTCACCCGG TACCGCTGGC GCGCAACCAG AATCCCCAGT
CCGTGGTCTA CCACCGTGAA CGCCTGA
|
|---|
| Protein sequence | MPQDAPLNGG ALTEPAGPVR RVAEMQAKLH RWAAAGPGRR FDDLFNLVHD PATLLVAYSR
VAGNLGARTA GVDGMTVADV ERHIGVPGFL DDLRVQVKTG TFRPLPVRER KIPKPGGSGK
VRRLGIPTVA DRVVQAALKL VLEPIFEADF LPVSYGFRPK RRAQDAIAEI HYYGTHGYRW
VLDADIEACF DSIDHVALMD RVRTRIKDKR VLTLVKAFLK AGILTELGDR RDTHTGTPQG
GILSPLLANI ALTVLDEHLM AGWRPDATMA SEYRRAQLRK RGEATWRLVR YADDFVVLVH
GGEDHAQALR EDVATMLAPL GLRLSPAKTR VVHLSDGFDF LGFHIQWRRK RGTNKWHVYT
FIAKRPIRSL KAKVRALTRR TSQQDLGTVL TRLNLVAHGW ANYFRHAVAK NVFSMLDNFI
WKRVIRMLIA RHRWSWTDVR RHFVTPVGRW RPISAGEIEL RPIAAIPVTR YRWRATRIPS
PWSTTVNA
|
|---|
| |