Gene Strop_4104 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_4104 
Symbol 
ID5060586 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp4666159 
End bp4668243 
Gene Length2085 bp 
Protein Length694 aa 
Translation table11 
GC content73% 
IMG OID640476365 
Productstage II sporulation E family protein 
Protein accessionYP_001160912 
Protein GI145596615 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2172] Anti-sigma regulatory factor (Ser/Thr protein kinase)
[COG2208] Serine phosphatase RsbU, regulator of sigma subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCAGCGG AGAGGGGGCC CGCGCCGACC GAAGGCCGGG ACGAGCGCAT CCGACGAGTC 
CGGCTCCCCG CCGATCCCCG AACGCCCGCT GCGGCCCGCG CACTCGTCCG GTCGATACTC
GCCGAGGCGG ACCTGCCGGA GCTGACCAAC GAGGCGCTCC TGCTCACCAC CGAGCTCTCC
ACCAACGCGG TGGAGCACGC CCGCACCGAA CTGGACCTCG AGGTCGTCGC CGACCGCCTG
GGTCTCACCG TCACCGTCTC CGACTTCGCC CGTGGGCCGG TCGAGGAGCT GACCGTTGGC
GTTCGCAACG AGAGCAGCGA CATCGCCGAC ATCTCCGAAC GGGGCCGAGG CCTGCTCCTG
GTTGACCACT TCGCCAGCCG GTGGGGCACC ACGTACCTGC CCACCGGCAA GGGTGTCTGG
TTCCGGCTCG ACCGGCCCGG CTTCATCGAT CACCCCTGCC GGCCCCCGGT CACCGCCGTG
CCAGCTACGG CGGCGGTAAA CGGTGACCAC ACCGCCGGCG AGGGCAGCTT CACGCCGAGC
GCCGCGGCGA TGAGTGAGCT GATGCAGACC GCACCCGACC CGTACGCGGA GGACTCCCTG
CCGGACTTCG CGACCAGCCT GTTGACGCGG GTGGCCGAGA TGGTTGGCGC GGCCGGTGGC
CTGGTCCGGC TGGACCGGGG CGACGGGCAG GGTCCGCAGC TACTGGCCCG CTTCGGCCGG
CAACCCCGAA TCGACAACGA TCTGGTACGG GTGCCGCTGA CCGTGCACCG GCCGTACGTC
GGCGAGCTGG AGCTGGACGC GGCGCCGTCC GCGTACGCCC GACCGCTGGC GGCGTTGATG
GCGGAGCGAC TCTCACTGCA CCTGGAGAAC GACCGGCTGC GCCGGGCCGA CCTGCGCCGG
CAGGCCTGGC TGACCTTCCT CGCCGAGGCA AGTGAGTTGC TCGCCCAGTC CCTCGACGTC
GAGTTGACCA TGGCGCTCAT CCCGCAGCTC GTGGTACCCC GACTGGGGCA GTGGTGCGCG
GTGCACACCA GCAATGAGTG GGGGCAGCTA CGCCTGGCGG CGGCCAGCCA CGCGGACGAG
TCCCTGCTGC CCCAACTACA CACCGTGCTG GCGGAGACCG GGCCGAACTC GATCCAGTCC
CGGTTGCGGG AGGCCTCCCG CAACGGCACT CAGCTCCCGC TCGGCGCCCC GACCGAGGGC
TTCGCCGTCC CGCTGATCGC CCGGGGCCAG CGACTCGGCA CCCTCGCTGT CGGTCGGCAC
CAGCGGCACC GGCACGACCC GGACGAGGTC GCCGTACTGG AAGATGTGGC CCGGCGGGCG
GCGCTGGCGA TCGAGAACGC TCGTATCCAC GCCGAGCGCC GCCGGGTCGC GCAGGCGCTC
CAGCAGTCGC TACTGCCACC CGTGCTGCCG GTGGTGGAGG GAATCGGCTT CGCCGCGGAG
TACGTCCCGA CCGGGGACGA CGCGGACGTC GGCGGCGACT TCTACGACGT GCTGCCGCTG
CCGGACGGGC GGTGGCTGGT GGTGATCGGT GACGTCTCCG GCAAGGGAGT GCAGGCGGCC
ACCCTCACCG GCCTGGTCCG GGATGTCATC CGGACGCTGA TCGGGGACGG CAAACCGCTG
TCGGAGGCGC TGACCCGGCT GAACGGGACC CTGGTCGAGC GGGGCGGCGG GCGATACTGC
ACCCTGGCCC TGGCCGCGGT CGGACCGGGT CCGGGCAACC AACTGGAGGT CTGCCTGTAC
CTCGCCGGGC ACGACCGGCC GGTGCTGCTG ACTGCCGCCG GTGAGGCCCG GTTCGTCGGC
ACCGGCGGCA CCGCGCTCGG GCTACTCGAC TCGATCGCCT CGCCGGCCAC CGAGCTCACC
CTGGACCCCG GCGAGGCATT GATCTTCTAC ACCGACGGGG TCACCGAGCG GCGGCGCGGG
CGGGAGCTCT TCGGGGTGGA TCGGCTCCGG GAGGCAACCG CCCCGCTCGC CGGCTACTCG
GCGGATGTCG TGGCGGCGCG GCTGCGCTCG ACCGCGCTCG GGTTCTCCAC CGAGACGCCC
CGGGACGACA TCGCGATCCT GGTCCTGCGC AACGACGCCG GCTAG
 
Protein sequence
MSAERGPAPT EGRDERIRRV RLPADPRTPA AARALVRSIL AEADLPELTN EALLLTTELS 
TNAVEHARTE LDLEVVADRL GLTVTVSDFA RGPVEELTVG VRNESSDIAD ISERGRGLLL
VDHFASRWGT TYLPTGKGVW FRLDRPGFID HPCRPPVTAV PATAAVNGDH TAGEGSFTPS
AAAMSELMQT APDPYAEDSL PDFATSLLTR VAEMVGAAGG LVRLDRGDGQ GPQLLARFGR
QPRIDNDLVR VPLTVHRPYV GELELDAAPS AYARPLAALM AERLSLHLEN DRLRRADLRR
QAWLTFLAEA SELLAQSLDV ELTMALIPQL VVPRLGQWCA VHTSNEWGQL RLAAASHADE
SLLPQLHTVL AETGPNSIQS RLREASRNGT QLPLGAPTEG FAVPLIARGQ RLGTLAVGRH
QRHRHDPDEV AVLEDVARRA ALAIENARIH AERRRVAQAL QQSLLPPVLP VVEGIGFAAE
YVPTGDDADV GGDFYDVLPL PDGRWLVVIG DVSGKGVQAA TLTGLVRDVI RTLIGDGKPL
SEALTRLNGT LVERGGGRYC TLALAAVGPG PGNQLEVCLY LAGHDRPVLL TAAGEARFVG
TGGTALGLLD SIASPATELT LDPGEALIFY TDGVTERRRG RELFGVDRLR EATAPLAGYS
ADVVAARLRS TALGFSTETP RDDIAILVLR NDAG