| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_4062 |
|---|
| Symbol | |
|---|
| ID | 5060544 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 4620841 |
|---|
| End bp | 4622166 |
|---|
| Gene Length | 1326 bp |
|---|
| Protein Length | 441 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640476323 |
|---|
| Product | NADH dehydrogenase subunit D |
|---|
| Protein accession | YP_001160870 |
|---|
| Protein GI | 145596573 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0649] NADH:ubiquinone oxidoreductase 49 kD subunit 7 |
|---|
| TIGRFAM ID | [TIGR01962] NADH dehydrogenase I, D subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.855736 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.069193 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGCGT CCAACTACGC CACCGAGCGG GAGACCGCCG AGGGCAAGGT CTTTACCGTC
ACCGGCGGGG ACTGGGATGT CGTCCTCTCC GGCACGGACC CGATCAACGA CGAGCGGATC
GTCGTCAACA TGGGCCCGCA GCACCCGTCC ACGCACGGGG TGCTCCGGCT GGTACTGGAG
CTCGAGGGCG AGACGGTCCG CGAGCTCCGC TCGGTCGTCG GCTACCTGCA CACCGGCATC
GAGAAGAACA TGGAGTTCCG CAACTGGGTC CAGGGCGCGG CCTTCGTGAC CCGGATGGAC
TATCTCGCCC CGCTGTTCAA CGAGACGGCG TACGCGCTGG CGGTGGAGAA GCTGCTCGGC
ATCGAGGAGC AGATCACCGA GCGGGCGACC ACCATCCGGG TCCTGATGAT GGAGCTCAAC
CGGATCTCCT CGCACCTGGT CTGGGTGGCT ACCACGGCCA TGGAGCTGGG CGCGATCAAC
ATGATGCTCT ACGGCTTCCG GGAGCGGGAG TACGTCCTGG AGATCTTCGA GCTGATCACC
GGGCTGCGGA TGAACCACGC CTACGTTCGC CCGGGTGGCG TGGCGCAGGA CGTGCCGGAC
GAGGCGATCG CCAAGATCCG TGACTTCTTG GAGCTGATGC CGAAGAAGCT CGCGGAGTAC
GAGAAGATGC TCTCCGGTCA GCCGATCTGG CTGGAGCGGA CGCAGAACGT CGGGGTGCTC
GACGCGACCG GCTGCCTCGC GATGGGCGTG ACCGGCCCGG TGCTGCGCTC CGCCGGCCTC
GCCTGGGACC TGCGCAAGAC GATGCCGTAC TGCGGCTACG AGACGTACGA GTTCGACGTG
CCGACCCACA CCGACGGTGA CGTCTGGGGC CGGTATCTGG TCCGGCTGGC CGAGATTCGG
GAGTCGTTGA AGCTCGTCGA GCAGGCGGTG GACCGGCTCC GGCCGGGCCC GGTGATGGTG
GCGGATCGGA AGATCGCCTG GCCGGCGCAG CTCGCCATCG GGGTCGACGG CATGGGTAAC
TCGCTGGAGC ACGTGGCGAA GATCATGGGG CAGTCGATGG AGTCGCTGAT CCATCACTTC
AAGCTCGTCA CCGAGGGCTT CCGGGTCCCG CCCGGCCAGG TGTACGTGGG CATCGAGGCA
CCCCGGGGCG AGCTGGGTGT GCACGCGGTC TCCGACGGGG GGACCCGACC GTACCGGGTG
CACTACCGGG AGCCGAGCTT CGTCAACCTC CAGGCCCTGC CAGCGATGGC CGAGGGCGGC
CTGATCGCCG ACGTGATCGC CGGTGGTGCC TCGCTGGACC CGGTGATGGG TGGGTGTGAC
CGGTGA
|
|---|
| Protein sequence | MSASNYATER ETAEGKVFTV TGGDWDVVLS GTDPINDERI VVNMGPQHPS THGVLRLVLE
LEGETVRELR SVVGYLHTGI EKNMEFRNWV QGAAFVTRMD YLAPLFNETA YALAVEKLLG
IEEQITERAT TIRVLMMELN RISSHLVWVA TTAMELGAIN MMLYGFRERE YVLEIFELIT
GLRMNHAYVR PGGVAQDVPD EAIAKIRDFL ELMPKKLAEY EKMLSGQPIW LERTQNVGVL
DATGCLAMGV TGPVLRSAGL AWDLRKTMPY CGYETYEFDV PTHTDGDVWG RYLVRLAEIR
ESLKLVEQAV DRLRPGPVMV ADRKIAWPAQ LAIGVDGMGN SLEHVAKIMG QSMESLIHHF
KLVTEGFRVP PGQVYVGIEA PRGELGVHAV SDGGTRPYRV HYREPSFVNL QALPAMAEGG
LIADVIAGGA SLDPVMGGCD R
|
|---|
| |