| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_4053 |
|---|
| Symbol | |
|---|
| ID | 5060535 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 4609334 |
|---|
| End bp | 4610866 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640476314 |
|---|
| Product | proton-translocating NADH-quinone oxidoreductase, chain M |
|---|
| Protein accession | YP_001160861 |
|---|
| Protein GI | 145596564 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1008] NADH:ubiquinone oxidoreductase subunit 4 (chain M) |
|---|
| TIGRFAM ID | [TIGR01972] proton-translocating NADH-quinone oxidoreductase, chain M |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.596762 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGACT TCCCGTTTCT CTCGGTGCTC ACCGTGGCGC CGCTGGTCGG TGCCCTGGTG
GTCGCCGTCC TGCCCCGCCG CCGGCCGGAG CTGGCCAAAC AGGTGGCGCT CGGCTGGTCA
CTGCTGGTGC TGGTGCTCTC GGTGGTCATG TGGGTGACCT GGCAGACCGG TGGTGACCGG
TTCCAGTTCC GCGAGTCCTA TCCGTGGATT CCGAACTGGG GCGTCAACTT CACCTTCGCC
GCCGACGGCA TCGCGCTGGT TATGCTGATG CTGATCGCGT TGCTGGTGCC GCTGGTGATC
CTTGCGTCCT GGCACGATGC CGAGTCGTCC AAGCGGTCGG TACCGGTCTA CTTCGCCCTG
TTGCTGGTGC TCGAGTGCAC GATGATCGGC GTCTTCGCCG CCGCCGACGT CTTCCTCTTC
TACGTGTTCT TCGAGGTCAT GCTCGTGCCG ATGTACTTCC TCATCGGAAG TTACGGCGGA
CACCAGCGGC AGTACGCGGC CGTGAAGTTC TTCCTCTACT CGCTGGTCGG CGGCTTGTTC
ATGCTCGCCG CGGTGATCGG CCTCTGGGTG GTCGGTGGAA AGACCTTCGA CTGGGTGGCG
CTGTCGCAGG TGGACATCTC CACCGGTGCC GAGCGCTGGC TGTTCCTCGG CTTCTTCGTC
GCCTTCGCCA TCAAGGCGCC GTTCTTTCCG TTCCACACCT GGCTGCCGGA CGCCGGTGGC
GCTGCCCCCG CCGGTGCCGC CGCGTTGCTG GTCGGTGTGC TCGACAAGGT CGGAACGTTC
GGCATTCTGC GCTACTGCCT TCCACTGTTC CCGGACGCGG CCAAGTGGTT CGCGCCGTGG
GCGCTGGCGC TGGGCGTGAT CGGCATCATC TACGCGGCGC TGCTCGCGGT CGGTCAGAAC
GACCTGAAGC GGCTGGTGTC GTACACCTCG ATCGCGCACT TCGGCTTCAT CGGGATCGGC
ATCTTCGCGT TCACCAGCCA GGCGGCCACC GGTGCGGTGC TCTACATGGT CAACCACGGG
CTCGCCACCG GTCTGCTCTT CCTGGTGGTC GGGATGCTGG TCGCCCGCCG AGGCTCTGCG
TTGATCAGCG ACTTCGGCGG CGCCGGAAAG CTGGTTCCGC TGCTGGCCGG AGTGCTCTTC
TTCGCTGGTC TCGCCTCGCT GGCGCTGCCC GGCACCGCAC CGTTCATCTC CGAGTTCCTG
GTGTTGATCG GCACCTTCTC GGTGAACAAG CCGGTGGCGG TGATCGCCAC GGTCGGGATC
ATCCTGGCCG CCGCATACGT GCTGTGGATG GTGCAACGCA CCACCCAGGG CACGCTCAAC
CCGGCGTTGA CCGAGGTCGA GGGCATGAAG CGTGACCTGA ACCTGCGCGA GAAGGTCGTG
GTGGCCCCGC TGGTCGCGCT GATCGTGCTG CTTGGCTTCT ACCCGAAGCC GGTCACGGAT
GTCATCAACC CTGCTGTCCA GGCGACGATG CAGGATATCG GCAAGACTGA CCCGGCCCCG
TCGGCCGGAA CTCCACAGGA GGCGAGCCGG TGA
|
|---|
| Protein sequence | MSDFPFLSVL TVAPLVGALV VAVLPRRRPE LAKQVALGWS LLVLVLSVVM WVTWQTGGDR
FQFRESYPWI PNWGVNFTFA ADGIALVMLM LIALLVPLVI LASWHDAESS KRSVPVYFAL
LLVLECTMIG VFAAADVFLF YVFFEVMLVP MYFLIGSYGG HQRQYAAVKF FLYSLVGGLF
MLAAVIGLWV VGGKTFDWVA LSQVDISTGA ERWLFLGFFV AFAIKAPFFP FHTWLPDAGG
AAPAGAAALL VGVLDKVGTF GILRYCLPLF PDAAKWFAPW ALALGVIGII YAALLAVGQN
DLKRLVSYTS IAHFGFIGIG IFAFTSQAAT GAVLYMVNHG LATGLLFLVV GMLVARRGSA
LISDFGGAGK LVPLLAGVLF FAGLASLALP GTAPFISEFL VLIGTFSVNK PVAVIATVGI
ILAAAYVLWM VQRTTQGTLN PALTEVEGMK RDLNLREKVV VAPLVALIVL LGFYPKPVTD
VINPAVQATM QDIGKTDPAP SAGTPQEASR
|
|---|
| |