Gene Strop_4052 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_4052 
Symbol 
ID5060534 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp4607784 
End bp4609337 
Gene Length1554 bp 
Protein Length517 aa 
Translation table11 
GC content69% 
IMG OID640476313 
ProductNADH dehydrogenase subunit N 
Protein accessionYP_001160860 
Protein GI145596563 
COG category[C] Energy production and conversion 
COG ID[COG1007] NADH:ubiquinone oxidoreductase subunit 2 (chain N) 
TIGRFAM ID[TIGR01770] proton-translocating NADH-quinone oxidoreductase, chain N 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCGAGC TGAAGCTTCC GTCGATCGAC TACGCGGCGC TCGCGCCGAC GCTCATCCTG 
CTGGGCGCCG CTCTGGTCGG TGTCCTGGTC GAGGCGTTCG TGCCGCGCCG GCTGCGGCAC
GTGGTGCAGC TCACGGTAGC GCTGCTGGCG GTGCTCGGCG CGCTGACCAT GGTGGTGTTG
AACGCCAATG ACCGTCTGAT CACCATCGGT GGGGCGATCG CCATCGATGG ACCGGCGCTC
TTCCTGCAGG GCGCGATCCT GGTGCTGGCC GCGATGGCCC TGCTGCTCAT CGGGGAGCGT
ACGGTCGAGC GCGGCGGGGC GTTCGTGGCT CAGGCGGCGG TGACCGCCGA GTCGGCGGAC
GACCGTCGGC AGGCCGAAGG GGCCCCCGGT CTGACCGAGG TGTACCCGCT GACCAGCTTC
GCGGTCGGGG GCATGCTGAT CTTCGTGGCG GCGAACGACC TGCTGACCAT GTTCATCGCG
CTCGAGGTCT TCTCGCTTCC GCTCTACCTG CTCTGCGCGC TGGCTCGCCG TCGGCGGCTG
CTGAGCCAGG AGGCGGCGAT GAAGTACTTC CTGCTCGGCG CGTACGCCTC GGCGTTCTTC
CTCTTCGGCG TCGCGTTGGT GTACGGCTTC ACCGCCGGCA TCCCCGACCG TGCGGCGGGG
GTTGACTTCG CCACCATCCA CGCGGCGGTC GCGGAGAGCC CGTCCAGCTC GGTGCTGCTC
TTCGGCGGTA TGGCGCTGAT CGCTATCGGC CTGCTGTTCA AGGCCGGCGC CGCGCCGTTC
CACGTCTGGA CGCCGGACGT CTACCAGGGG GCGCCCACCC CGATCACCGG CTTCATGGCA
GCCTGCACGA AGGTCGCGGC GTTCGGTGCC CTGCTGCGGG TCTTCCACGT CGCCTTCGAG
GGGGCCCGCT GGGACTTCAC TCCGATCCTC GGCGTGGTAG CGGTGCTGAC CATGCTCGTC
GGGGCAGTGC TGGCGGTCAC CCAGACCGAC ATCAAGCGGC TGCTCGCGTA CTCCTCGATC
GCCAACGCGG GGTATCTGCT GGTCGGGGTG CTCGCGCCGA CCAGCGAAGG GGTCTCCGGG
ACGATGTTCT ACCTGGTCGC CTACGGCTTC TCGGTGCTGG CCGCGTTCGC CGTGGTCACC
CTGGTCCGGG ACGCGGACGG CGAGGCCACC CACCTGTCCC GCTGGGCGGG TCTGGGCCAG
CGCTCCCCCT TCTATGCCGG GCTGTTCACC TTCATCCTGC TCGCCTTCGC CGGTATTCCG
TTGACCAGCG GATTCACGAG CAAGTTCGCG GTCTTCAGCG CGGCGTTCGA CGGTGGTCAG
GGTTGGTTGG TGATCGCCGG CGTGCTGACC AGCATGGTGC TCGCCTTCCC GTATCTGCGG
GTGGTCGTGC TGATGTGGCT CTCCGAGCCC GGCGAGTCCA CTCCCGCCGT CGTCGTGCCG
GGCTGGCTGA CCTCGGCCGC GCTGACGATC GGTGTGGTCG CCACCTTGGC GCTCGGGGTG
TTTCCGGACC CGCTGCTCGA TCTCGCCGCG GGAGCCGCAG AGTTCGTGCG GTGA
 
Protein sequence
MSELKLPSID YAALAPTLIL LGAALVGVLV EAFVPRRLRH VVQLTVALLA VLGALTMVVL 
NANDRLITIG GAIAIDGPAL FLQGAILVLA AMALLLIGER TVERGGAFVA QAAVTAESAD
DRRQAEGAPG LTEVYPLTSF AVGGMLIFVA ANDLLTMFIA LEVFSLPLYL LCALARRRRL
LSQEAAMKYF LLGAYASAFF LFGVALVYGF TAGIPDRAAG VDFATIHAAV AESPSSSVLL
FGGMALIAIG LLFKAGAAPF HVWTPDVYQG APTPITGFMA ACTKVAAFGA LLRVFHVAFE
GARWDFTPIL GVVAVLTMLV GAVLAVTQTD IKRLLAYSSI ANAGYLLVGV LAPTSEGVSG
TMFYLVAYGF SVLAAFAVVT LVRDADGEAT HLSRWAGLGQ RSPFYAGLFT FILLAFAGIP
LTSGFTSKFA VFSAAFDGGQ GWLVIAGVLT SMVLAFPYLR VVVLMWLSEP GESTPAVVVP
GWLTSAALTI GVVATLALGV FPDPLLDLAA GAAEFVR