| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_4039 |
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| Symbol | |
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| ID | 5060521 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | - |
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| Start bp | 4590323 |
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| End bp | 4591528 |
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| Gene Length | 1206 bp |
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| Protein Length | 401 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640476300 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001160847 |
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| Protein GI | 145596550 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAAGG CGGACGACGG CCTCGCCGCG AGAGTCCGAC AGCGAATCGC GTCCTCGTCA
ACTCCGGTCA CCCCGGCGGC GATCGTCTCC GCCGTGCGCG CCGAGCCGGC CGCCGCGGTG
CTCGGCGACA CCACGCTGCT CCGCCTCGCC GACCGAGTGC ACGACGACCT GGTGGGCGCC
GGTCCGTTGG CCCCGCTGTT GGTCGATCCA CGCGTCACCG ATGTCCTCGT CAACAACGTT
CACGTCTGGG TCGACCGAGG GGAGGGCCTG AAAGAGGTCG CGGTACCGGT GGGTTCGGTG
GACGACGTCC GGCGGCTCGC GCAGCGGCTC GCAGCCAGCG CGGGGAGGCG GCTGGACGAC
GGCTCGCCGT GCGTCGACGC GCGGCTCGCC GACGGCACCC GACTACACGC GGTCCTGCCA
CCAGTGGCCA CCGACGGTCC ATACCTGTCC CTGCGGACCT TCCGGCAGCG CCCGTTCACG
CTCGACGAGA TGGTTGGTCA GGGGGCCGTG CCACGGGCGG TCGCCCCGGT GCTGGCCGCG
GTGGTGGCGG CCCGGCTCGC GTACCTCGTG GTCGGCGGCA CCGGTTCCGG CAAGACCACA
TTGCTCAACA CGCTACTTGG CCTGGTTTCG GGCACGGAGC GGATCGTGCT GGTAGAGGAC
GCGGCTGAGC TGCACCCCGT ACATCCCCAT GTCGTCGGCC TCCAGGCACG TACAGCCAAT
GTGGAGGGTG TAGGTGCGGT GGGCCTGACC GACCTGGTCC GGCAGGCGCT GCGGATGCGA
CCGGACCGCC TCGTCGTCGG CGAGTGCCGC GGCCGGGAGA TCGTCGACCT GTTGGTGGCC
ATGAATACCG GTCACGAGGG TGGTGCCGGG ACGCTGCACG CCAACACCCC GTCGGATGTG
CCGGCTCGGC TCGAGGCACT CGGTCTCCTC GGTGGATTGC CCCGGCCCGC ACTGCACGCT
CAGGTGGCGG CGGCACTCCA GGTGGTGCTG CATGTCCGTC GCGCGGATCG GGGACGGGCA
CTGGATTCCA TCTGCCTACT TCTGCCGGAA GGCCCTGATC GGCTGGTCAG GGCGGTTCCA
GCCTGGGGCC TTGACAGCGG CCCCGGCCCG GCTGCCCGGA CGCTGGCCGA GTTACTGGGC
AGGCGGGAGG TGGCGGTGCC ACCGATCCTT CGGGGGCCCT GGCCCGGTCA GGCAGGTGTG
GGATGA
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| Protein sequence | MTKADDGLAA RVRQRIASSS TPVTPAAIVS AVRAEPAAAV LGDTTLLRLA DRVHDDLVGA
GPLAPLLVDP RVTDVLVNNV HVWVDRGEGL KEVAVPVGSV DDVRRLAQRL AASAGRRLDD
GSPCVDARLA DGTRLHAVLP PVATDGPYLS LRTFRQRPFT LDEMVGQGAV PRAVAPVLAA
VVAARLAYLV VGGTGSGKTT LLNTLLGLVS GTERIVLVED AAELHPVHPH VVGLQARTAN
VEGVGAVGLT DLVRQALRMR PDRLVVGECR GREIVDLLVA MNTGHEGGAG TLHANTPSDV
PARLEALGLL GGLPRPALHA QVAAALQVVL HVRRADRGRA LDSICLLLPE GPDRLVRAVP
AWGLDSGPGP AARTLAELLG RREVAVPPIL RGPWPGQAGV G
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