| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3997 |
|---|
| Symbol | |
|---|
| ID | 5060478 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 4548605 |
|---|
| End bp | 4549621 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640476257 |
|---|
| Product | alpha/beta hydrolase fold |
|---|
| Protein accession | YP_001160805 |
|---|
| Protein GI | 145596508 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.481692 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACTC TCGACACCCC TACCCGCTCG ACCAGTAGCA GCCGTCGCCG GCTCGTCACC
GCCCTGCTGG CGGGTGTGAC CGCGGTCGGT ATCGCCGCCG GCGGTACCGC CATCGCCACC
AACAGCAGCA GCGAGGCCCA GGCCGGCGCC GCGGCCGCGG CCGGGAAACG GTCGAACCTG
AACGAGGGAT TCGTCACCAC CCGCGACGGC GTGGACATCT TCTACAAGGA CTGGGGCCCC
CACGACGGAC GACCCGTGGT CTTCAGCCAC GGCTGGCCCC TGAACTCCGA CAGCTGGGAA
TCCCAGATGA TGCACCTGGC CGACAACGGC TACCGCGTCA TCGCCCACGA CCGCCGGGGC
CACGGCCAGT CCTCCCAGAC CTGGGAGGGC AACGACATGG ACCACTACGC CGACGACCTC
GCCACCGTCA TCACAAAGCT GAAGCTACGG GACGTGACTC TGGTCGGGTT CTCCACCGGC
GGCGGAGAAG TCGCCCGCTA CGTCGGCCGA CACGGCACCG ACCGCATCGC CCAGGTCGCC
CTCGTCGGCG CGGTCACCCC ACTGATGCTC AAGACCCCTG ACAACCCCAA CGGCGTACCC
ATCGACGTCT TCGACGGCCT CCGGGAAGGC TCCCTCACCG ACCGCTCCCA GCTCTACCGC
GACCTCGCCG AAGGACCGTT CTTCGGCGCC AACCGCCCCG ACGCCGAGGT ATCGCAGGGC
ATGAAGGACA CCTTCTGGCT ACAGAGCATG CAGGCCGGCC ACAAAGCCGC CCACGACTCG
ATCAAGGCGT TCTCCGAAAC CGACCTCACC GAAGACCTCA AGCGCTTCGA CGTACCCACC
CTGATCATCC ACGGCGGCGA CGACCAGGTC GTGCCAATCG AGAACTCCGC CCACGAAGCA
CACGAGATCG TGGCCGACTC CACCCTCAAG GTCTACCCCG ACGGCCCCCA CGGCATCACC
GACACCCACA AGCAGCAGCT CAACAACGAC CTACTCACCT TCGTCAACAG CCTCTAA
|
|---|
| Protein sequence | METLDTPTRS TSSSRRRLVT ALLAGVTAVG IAAGGTAIAT NSSSEAQAGA AAAAGKRSNL
NEGFVTTRDG VDIFYKDWGP HDGRPVVFSH GWPLNSDSWE SQMMHLADNG YRVIAHDRRG
HGQSSQTWEG NDMDHYADDL ATVITKLKLR DVTLVGFSTG GGEVARYVGR HGTDRIAQVA
LVGAVTPLML KTPDNPNGVP IDVFDGLREG SLTDRSQLYR DLAEGPFFGA NRPDAEVSQG
MKDTFWLQSM QAGHKAAHDS IKAFSETDLT EDLKRFDVPT LIIHGGDDQV VPIENSAHEA
HEIVADSTLK VYPDGPHGIT DTHKQQLNND LLTFVNSL
|
|---|
| |