| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3968 |
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| Symbol | |
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| ID | 5060449 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | - |
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| Start bp | 4519782 |
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| End bp | 4520720 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 640476228 |
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| Product | ATP dependent DNA ligase |
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| Protein accession | YP_001160776 |
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| Protein GI | 145596479 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.697199 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCCGGCG TGCCGCCCAA GCCGATGCTC GCGACGACCG GGGAGCTGCC GGCGGGCGCG
GGCTGGGCCT ATGAGTTCAA ATGGGACGGA ATCCGAGCGC TGGTCAACAT TGGCGACGGT
CAACACCGGG TGTACGCCCG CTCTGGCGTT CAGGTCACCG TCGCCTACCC GGAACTGGCC
GGCCTGCCCG CGCAGGTGGA TGACGTCCTC CTCGATGGCG AGGTGGTGCT CTTCGGCGAG
ACCGGGCAGC CTTCGTTCAC GGCGCTCGCC GAGCGAATGC ACGTCCGGGA CCGGGGCCGG
GCTGCGCGGC TCGCGGCGTC CCTGCCCATC ACGTACCTGG TCTTCGACCT GTTGCGGCTC
GACGGCATCG ACCTGACCGG CTACTCGTGG CAGCGGCGGC GAGCCGTTCT CGACGAGTTG
GGGTTGGCCG GGCCTCGTTG GGCGGTCCCG CCGGCTTTCA CGGACGGCCC GGCGACCCTC
CAGGCGGCGG GGGAGCACGG CCTGGAGGGG GTGATGGCCA AACGGGTCGG TTCCGTCTAC
CGGCCGGGTA CGCGTTCGCC GGACTGGGTC AAGGTCAAGT TGGAGGTGAC CGGCGACTTC
GTCGTGGGTG GCTGGCGGCC GGGAGCCCGC CGGCTCGGCG GGCTGCTGGT CGGGGTGCCA
CGGTCGGACG GCCGCCTCGC CTACCGGGGG CGGGTCGGCG GTGGCATCGG TGCGGCGCTG
GAGCGGGAAC TGCTGCGCGA GCTGGAACCC CTGCGCACCG GTGCTTCCCC CTTCGTCGGG
GACCTTCCCC GCGAGGACAC CCGGGCGGTG GTCTGGGTCG CCCCCCGGGT CGTGGTGGAG
GTGAAGTACG GCCAGCTCAC CCCGGATGGG CGACTGCGCT TTCCCCGGGT GCTGCGGTTG
CGCCCGGACA AACTCGCCGA GGAGGTTGAC GATGTCTGA
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| Protein sequence | MPGVPPKPML ATTGELPAGA GWAYEFKWDG IRALVNIGDG QHRVYARSGV QVTVAYPELA
GLPAQVDDVL LDGEVVLFGE TGQPSFTALA ERMHVRDRGR AARLAASLPI TYLVFDLLRL
DGIDLTGYSW QRRRAVLDEL GLAGPRWAVP PAFTDGPATL QAAGEHGLEG VMAKRVGSVY
RPGTRSPDWV KVKLEVTGDF VVGGWRPGAR RLGGLLVGVP RSDGRLAYRG RVGGGIGAAL
ERELLRELEP LRTGASPFVG DLPREDTRAV VWVAPRVVVE VKYGQLTPDG RLRFPRVLRL
RPDKLAEEVD DV
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