| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3945 |
|---|
| Symbol | |
|---|
| ID | 5060426 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 4498504 |
|---|
| End bp | 4499769 |
|---|
| Gene Length | 1266 bp |
|---|
| Protein Length | 421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640476205 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001160753 |
|---|
| Protein GI | 145596456 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.736514 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGATCGCCC TCGAAGACCT ACCTCCGGGT GGTGTGGGCG TAACGGCGGG GCGGCGACTG
CCCACCTCGT ACCTGCTCTG GCTCGCCGGG ATCCTCGCCT CGCTGCTGGG CAACTCGCTC
TTCTACTTCG CCCTCGGTTG GGAGGCGAGT GCGCACGGCG GTGCCGTCGC CGGTCTTGTT
CTCACCGCCA TCACGCTGCC GCGGGTGCTG CTGCTCCTGA TAGGTGGAGC GGTCGGGGAC
CGGGTGAGTG CCCGTCGAGT TCTCATCATC GGCGATGCCG TGATGCTTGT CTTCTCCGTC
GCCCTGGCGG CGTCGGCCTA CCACCTCGGG GCGCCGCCCT GGCTGCTGAT CGCCGCCGGC
GTCGCCGTGG GGGTCGCGGA CGCCTTCTAT CTGCCAGCGT CCGGATCGAT GCCGCGACGG
CTGGTAAGCC AGGACCAACT TTCGCAGGCC CTGGCGTTGC GCCAGGTTGG CGGTCAGCTG
GTCGCCATGG GCGGCGGTCC GCTCGGCGGC GTTCTCGTCG GGTTGGCCGG GTTGGCGGGG
GCCGCCCTGG TCAACGCGGT GACCTTCGCC GCGGTGCTGA CGCTTCTGAT CATCATCCGG
CCTCGGTACA ACGGGCCCGC CACCGCGCGC AGCGGAGGGG TTGTGCGCGA CGCGGTCGAC
AGCATCCGCG TCGGCTTCCG TGATCCGGTC CTGCGTCCCG GGCTAACGCT GACCGGGGCC
GCGGCAGGTT TCCTGCTTCC GGTGCTTCCG TTGCTGGTCC CACTGCTTGC GCGGGCGGAG
GACTGGGGGG CGGCGGCTGG TGGTCTGATC TTTGGGGCGC AGGGCGTTGG TATGGCCATC
GTCACCCTGG CTGTCGTGCG TCGCGGCCCG CTCGGCCGGC CCGGTCTACT CGCTGCCTGC
GGCCTATTGA TCGCTGGTGC TGGAGTTGCT GGGCTGGCGC TCTCCTCCAC TGTGGGGATC
GCCGTCGGCG TGGGGCTGAT CATGGGGTTC GGGAGTGGGC TCTTCGCCTC GCACCTGGGT
CCGCTGATCC TCGGCGTGAC TCCGGACACT CACCTCTCTC GCATTCAGGC CCTGCTGACA
CTGGTGCAGA GCCTGGCTTC GTTGATCATG GTTAATGTGC TCGGCCTCAT CGTCGATCAC
CGCGGAGCGG CGGTGGCGAT CCTGATCTGC GCAGCGGCCA CGAGCTGCGT TGGGCTGCTG
GGCCTACGGT CCGCGCCGCT GCGTACCAGT CGCTTCGGAC TGAACACCAC CTCCGTCGAC
CGATGA
|
|---|
| Protein sequence | MIALEDLPPG GVGVTAGRRL PTSYLLWLAG ILASLLGNSL FYFALGWEAS AHGGAVAGLV
LTAITLPRVL LLLIGGAVGD RVSARRVLII GDAVMLVFSV ALAASAYHLG APPWLLIAAG
VAVGVADAFY LPASGSMPRR LVSQDQLSQA LALRQVGGQL VAMGGGPLGG VLVGLAGLAG
AALVNAVTFA AVLTLLIIIR PRYNGPATAR SGGVVRDAVD SIRVGFRDPV LRPGLTLTGA
AAGFLLPVLP LLVPLLARAE DWGAAAGGLI FGAQGVGMAI VTLAVVRRGP LGRPGLLAAC
GLLIAGAGVA GLALSSTVGI AVGVGLIMGF GSGLFASHLG PLILGVTPDT HLSRIQALLT
LVQSLASLIM VNVLGLIVDH RGAAVAILIC AAATSCVGLL GLRSAPLRTS RFGLNTTSVD
R
|
|---|
| |