| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3943 |
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| Symbol | |
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| ID | 5060424 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | - |
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| Start bp | 4495082 |
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| End bp | 4497610 |
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| Gene Length | 2529 bp |
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| Protein Length | 842 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640476203 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001160751 |
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| Protein GI | 145596454 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGACA GTTCCCCGCC GGTGCGTAGG ACCACCGAGC AGGTCTGGCT GATCACCGCC
CCACTGGCGA TGGTTGCGGT GTTTTGTACC GTCGTCCTGG CGCTCGCGAC CGAGTCGTCG
CTCGGCAACC TAACCATCAC CACGGCTCTG CTCGTCGCGA TGGTCGCGGC GAGCACGCAC
GTCCTGCAGA TCGTCGTACG CCGCCAGGCG CTCGAGGTGA TCGCCACCGA GATCCCACTC
GTGCTGGCTT TCTACTACCT GCCGCCGTTG ACAGTTGTGG CGATCATGGT GCTGTCCGCC
ATTGTCGCGC AGTACTGGCG TCGGCTCGCC GCGGTGAAGG TCTGGTTCAA CGTGGCCTGC
AAGGGTGCGG CCGCCTCACT CGGTGGCGTC GTCCTGGTTG GGCTCTCCGG CGTTGATGGA
GTCGGTCCTC GGACGTGGGC GGTCCTGTTC GCCGCGGTGA CGGTGAACTC GGTGGTTTCC
CTGATCGCGA TCAGTGGAGT CGTGAGTCTG TTGCACGGCT GGCAGGCCGG CTGGGAGTTG
TTCCGCAGGT CCCCGGTGCC GCTGCTGGTC AACTCCATCA ACGTGTTGAT CGGTCTGGTC
CTGCTGCTGG CGTTGGAGTC GACCTGGTGG TCGATGTTGT TGATCGCCGT GCTGGCCGTC
GCGATGGTGG TGATATACCG GTCGTACGCG CAGTTCCTCC GGCAGCATCG CATGCTCAGT
AGCATGTACG AGCTGACCCG GGCGATGACC GAGGGTGGTC GGGAAGGCGC CATCGCCGAC
GTCCTGCTTG GCCGAATCCG GGCGCTGATG CAGGCCGAGT ACGCGACCCT GTGGCTCCCC
GCGCTGGGGC GCTATCCCGA GATGTTGCTC AGCGCCCGGG TGGACGACCG GGGCCTGCTC
GATGTCGCAC CGACCCCTGC TGACCTGCGT GAGCAGGTCC GGGAGTCCGG TGAGACCCTC
GCCGCCGGGC GGGCTCTTCC GAAATTTCCC GACATCTCGC GGGATCTGGC CGGGCACGGG
GTGAAGGACG TGATCGTCGT TCCGTTGCGG TCGGGAAAGG CCGTCATCGG CACACTGGAG
GTCGTCAACC GGCTCAGTGA CGGCGGTCAC TTCACCCCGG AGGACATCCC CGTCTTCGAG
ACCGTCGCCG CGCACACCGC GGTCGCACTC GAGAATTCCC GGCTGGTCGA CCGGCTGCGG
TACGACGCCT ACCACGACAC GCTCACCAAG CTGCCCAACC GGCGGCGAGT CACCGAGGCA
CTCGACGAGG CGGTCAAGAT CCGAGCGCCG GGCGAGGTGG TGGCGCTGCT GCTCTTCGAC
GTGGATCGAC TCCGCGAGGT CAACGAGTCC CTCGGGCGCG CCGCTGGGGA CAAGGTGTTG
GTCGAGGTCG CCGCGCGGCT TCGGTCCCGT GCGCCGTCCT CTGCGCTGGT GGGTCGGGTT
GGCGGGGACG AGTTTCTCGT GACCCTCCGG CTGGCGGACG CCGCTGAGGC CCGGGACCTG
GCGGCTCGGA TGCGGGAGCA GATCCGGGCT GTGGTGACCT TCGACGGGCT CGCCCTCGAC
GTGGATACGG CGGTGGGTAT CACCGTCCAC CCGGATCACG GCAGTGGGGC CGCCGTGCTG
CTGCAGCGGG CCGATCTGGC CGTGACGGCG GCCAGGTCCG CCTCGGGGAA CGTCCAACTG
TTCAATCCGG CGCTGGAGTC CCGGTCGTTG CGGCGGCTTG GTCTCGCCGG TGACCTGCGG
CGGGCCCTGG ACAACAATGA GTTGGAGGTG TACTTCCAGC CCAAGGTCAA CCTGCGGGAT
CGGCGGTTGG TCGGCGTCGA GTGCCTTGCC CGCTGGGAGG GCGGCGCCCA CGGGTCAGTC
TCGCCGGAGG ACTTCGTGGC GGTCGCGGAG CACATCGGTC AACTGGGGCG GCTCACCGAG
TTCGTACTCC GGGAGGGGCT ACGGCGTAGC CGTGACTGGG CGCACGGTGG TCACCCGCTC
TCCGTCGCGG TCAACCTCTC CCCGCGTACG CTGACCGACC GGCACTTCCC GGAGCGGGTG
CGGGAACTGC TCGAGGAGTA CGGCGTGCCG CCGCAGCGGC TCACGTTGGA GATTCGGGAG
TCCGGGGTGC TGGACGGCAC CGACCGCCCC ATTCCGATCC TGCGGTGCCT GCGTGAGTTG
GGAGTCCGCC TGTCGGTGGA TGACTTTGGC ACGGGTGACT TGTCGCTTGT GCACCTGCGC
CGGCTCCCCG TGCACGAGGT GAAGGTCGAT CGCCGGTTTG TGCAGGGGAT GGCGACCGAC
CCCGGAGACC TGGCCATCGT CAACGCGGTG GTCACGCTCT CCCAGCAGTT CGGCCTTGCA
GTGGTTGCCG AGGGCGTGGA GAGCGAGTTG ACCTTGGAAC TCCTCCAGGA CATTGGGTGT
GAGTACGGGC AGGGGTTCCT GTTCAGCCGC CCGTTGCCCT ATGAGCGGCT GGAGGCGTGG
TTCGGCGCCC AGGTGGAGTC GGAGGCGGTG GCGGCGGGGG AGCCGCCACG ACTTCGGGTC
GTGCCGTGA
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| Protein sequence | MSDSSPPVRR TTEQVWLITA PLAMVAVFCT VVLALATESS LGNLTITTAL LVAMVAASTH
VLQIVVRRQA LEVIATEIPL VLAFYYLPPL TVVAIMVLSA IVAQYWRRLA AVKVWFNVAC
KGAAASLGGV VLVGLSGVDG VGPRTWAVLF AAVTVNSVVS LIAISGVVSL LHGWQAGWEL
FRRSPVPLLV NSINVLIGLV LLLALESTWW SMLLIAVLAV AMVVIYRSYA QFLRQHRMLS
SMYELTRAMT EGGREGAIAD VLLGRIRALM QAEYATLWLP ALGRYPEMLL SARVDDRGLL
DVAPTPADLR EQVRESGETL AAGRALPKFP DISRDLAGHG VKDVIVVPLR SGKAVIGTLE
VVNRLSDGGH FTPEDIPVFE TVAAHTAVAL ENSRLVDRLR YDAYHDTLTK LPNRRRVTEA
LDEAVKIRAP GEVVALLLFD VDRLREVNES LGRAAGDKVL VEVAARLRSR APSSALVGRV
GGDEFLVTLR LADAAEARDL AARMREQIRA VVTFDGLALD VDTAVGITVH PDHGSGAAVL
LQRADLAVTA ARSASGNVQL FNPALESRSL RRLGLAGDLR RALDNNELEV YFQPKVNLRD
RRLVGVECLA RWEGGAHGSV SPEDFVAVAE HIGQLGRLTE FVLREGLRRS RDWAHGGHPL
SVAVNLSPRT LTDRHFPERV RELLEEYGVP PQRLTLEIRE SGVLDGTDRP IPILRCLREL
GVRLSVDDFG TGDLSLVHLR RLPVHEVKVD RRFVQGMATD PGDLAIVNAV VTLSQQFGLA
VVAEGVESEL TLELLQDIGC EYGQGFLFSR PLPYERLEAW FGAQVESEAV AAGEPPRLRV
VP
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