| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3932 |
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| Symbol | |
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| ID | 5060410 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | - |
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| Start bp | 4481199 |
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| End bp | 4485092 |
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| Gene Length | 3894 bp |
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| Protein Length | 1297 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640476189 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_001160740 |
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| Protein GI | 145596443 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.410822 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTCGACG TCAACTTCTT CGACGAGCTG CGCATCGGCC TCGCCACCGC CGACGACATC
CGGCAGTGGT CCCACGGCGA GGTCAAGAAG CCGGAAACGA TCAACTACCG CACTCTCAAG
CCGGAGAAGG ACGGGCTTTT CTGCGAGAAG ATCTTCGGTC CTCAGCGGGA CTGGGAGTGC
TACTGCGGCA AGTACAAGCG GGTCCGCTTC AAGGGCATCA TCTGTGAGCG CTGCGGCGTC
GAGGTGACTC GGTCCAAGGT CCGCCGGGAG CGGATGGGGC ACATCGAGCT GGCTGCCTCG
GTGACCCACA TCTGGTACTT CAAGGGCGTG CCGAGCCGGC TGGGTTACCT GTTGGATCTT
GCCCCCAAGG ATCTTGAGAA GATCATTTAC TTCGCCTCGT ACGTGGTGAC GAGCGTGGAC
GCCGAGGCGC GTCACCGGGA TCTCGCCACC ATCGAGAACG AGATTCTCGC CGAGAAGCGG
CAGTCCGAGA ACAGCCGGGA CTCGGAGATC GAGAAGCGGG CTGGCAAGCT CGAGGCCGAC
CTCGCCGAGC TGGAGGCCGA GGGCGCCAAG GCGGACGTCC GGCGCAAGGT CAAGGAGGGC
GGAGAGCGCG AGATGCGCCA GATCCGCGAC CGGGCCCAGC GTGAGATCGA CCGCCTGGAC
GAGGTGCTGG ACACCTTCCG CAAGCTGGAG CCGAAGCAGC TGGTCACCGA CGAGTTGCTC
TACCGGGAGC TGCGCGACCG GTTCGGCGAG TACTTCACCG GTGGGATGGG GGCCGAGGCA
ATCAAGGCCC TGGTCCAGAA CATGGACCTC GACGCCGAGG CGGAGAGCCT GCGGGAGACC
ATCCGCACCG GTAAGGGGCA GCGGAAGATC CGGGCGCTCA AGCGACTCAA GGTGGTCGCC
GCGTTCCTGA ACACCAGCAA CTCGCCGCTC GGCATGGTGC TGGACTGCGT CCCGGTCATC
CCGCCGGACC TGCGCCCGAT GGTGCAGCTC GACGGTGGCC GCTTCGCGAC CTCCGACCTG
AACGACCTGT ACCGTCGGGT GATCAACCGG AACAACCGCC TCAAGCGGCT GATCGACCTC
GGCGCTCCCG AGATCATTGT CAACAACGAG AAGCGGATGC TTCAGGAGGC CGTTGACGCG
TTGTTCGACA ACGGTCGCCG TGGTCGACCG GTCACCGGTC CGGGTAACCG TCCGCTCAAG
TCGTTGTCCG ACATGCTCAA GGGCAAGCAG GGCCGGTTCC GGCAGAACCT GCTCGGTAAG
CGGGTCGACT ACTCGGGTCG ATCGGTCATC GTGGTCGGTC CGAAGCTCAA GCTGCACCAG
TGCGGCCTGC CCAAGCAGAT GGCGTTGGAG CTGTTCAAGC CGTTCGTGAT GAAGCGGCTG
GTGGATCTCA ACCACGCGCA GAACATCAAG TCTGCCAAGC GGATGGTCGA GCGGCAGCGG
CCGGTCGTCT GGGATGTCCT CGAGGAGGTC ATCGGCGAGC ACCCGGTGCT GCTCAACCGG
GCGCCGACCC TGCACCGACT GGGTATCCAG GCGTTCGAGC CGCAGCTGGT CGAGGGCAAG
GCGATCCAGA TTCACCCGTT GGTCTGCACC GCGTTCAACG CCGACTTCGA CGGTGACCAG
ATGGCGGTCC ATGTGCCGCT GTCGGCCGAG GCTCAGGCCG AGGCGCGGAT CCTGATGCTC
TCGTCCAACA ACATCCTCAA GCCGGCCGAC GGCAAGCCGG TGACCATGCC CACCCAGGAC
ATGATCATCG GTCTCTACCA CCTCACCCAC CGCACTCCGG GTGAGCGGGG TGAGGGCCGG
GCGTTCAGCT CGGACGCCGA GGCGCGGATG GCGTTCGACA ACGGGGAACT GCACCTGCAG
GCGCCGGTGA AGATCCGCCT GCGCGGTCTC GTCGGGGTCG AGAGCGGCCC CGGTGCCGAG
CCGTGGACCG CGCCGGAGGG CTGGGTCGAG GGTGACCCGA TCACGGTGGA GACGACGCTC
GGTCGGGTCC TGTTCAACGA GACCCTGCCT CCGGGCTACC GGTTCGTGAA CTACGAGATC
CGAAAGGGTC AGCTCTCCGC GATCGTCAAC GACCTCGCCG AGCGTTTCCC GAAGGTCGCT
CTCGCGGCCA CCCTGGATGG TCTCAAGGAG GCCGGCTTCC ACTGGGCCAC CTGGTCCGGC
GTGACCATCG GGATGGAGGA TGTCCTTGCG CCGCCGCGCA AGCGGGAGAT CCTCGGTCGG
TACGAGAAGG AAGCGGACCG GATCGACAAG CAGTACCAGC GTGGTCTGAT GACCGCCGAG
GAACGTCGCG GTGAGCTCAT CGAGATCTGG ACCAAGGCGA CCAACGAGGT CGCCAAGGAG
ATGGACACCG CGCTACCGCA GGAGAACCCA CTCTGGAAGA TGATCAATTC GGGAGCCCGC
GGTAACCTGC TGCAGCTCCG GCAGATCGCC GCGATCCGTG GCTTGGTGGC GAACCCGAAG
GGTGAGATCA TCCCGCGTCC GATCAAGGCC TCCTACCGCG AGGGCCTGTC GGTACTGGAG
TACTTCATCT CCACGCACGG TGCCCGCAAG GGCCTGGCGG ACACCGCCCT GCGTACCGCC
GACTCGGGTT ACCTGACCCG TCGTCTGGTG GACGTCTCGC AGGACGTGAT CATCCGCGAG
GAGGACTGCG GCACCGACCG GGCCATTCCG ATGCAGGTGG GTCAGCAGGC CGGGGAGGCC
GGCTCGCTGG TCGTGCACGA GCACGCGGAG ACCAGCGTGC ACGCCCGTAC GTTGGCGGAC
GACATCAAGG GGCCGGACGG CACCGTCGTC GCCGAGCGGG GCGCGGACAT CAACTCGATC
CTGGTGGACA AGATCGTCGC CGCCGGGGTG GAGTCCGTCC GGGTCCGCAG CGTGCTCACC
TGTGAGTCGA AGCTGGGCGT CTGCGGGGCC TGCTACGGCC GTTCGCTCCC GACCGGCAAG
ACCGTGGACG TCGGCGAGGC GGTTGGCATC ATCGCCGCCC AGTCGATCGG TGAGCCGGGT
ACGCAGCTCA CGATGCGTAC CTTCCACACC GGTGGTGTCG CTGGGGAGGA CATCACCCAG
GGTCTGCCCC GGGTCCAGGA GATCTTCGAG GCTCGTATCC CGAAGGGCAA GGCCCCGATT
GCGGACACCC CTGGTCGGGT CCGGATCGAG GACGGCGAGC GGTCTCGGAA GATCATTGTG
GTGCCGGACG ACGGCAGTGA CGAGATCGCC TACGACAAGA TCTCCAAGCG GGTCCGACTG
CTGGCCAACG ACGGCGACCA CGTCGAGGTC GGCGAAAGGC TCACCGTGGG TACGATCGAC
CCGCACGAGC TGCTCCGCAT CCTGGGTCCG CGTGCGGTCC AGGTCCACCT GACCCAGGAG
GTTCAGGAGG TCTACCGCTC GCAGGGTGTG CTGATCCACG ACAAGCACAT CGAGATCATC
ATCCGGCAGA TGCTCAAGCG GGTGACGGTC ATCGACTCCG GCTCGACCGA GTTCCTGCCG
GGCGTGCTCG TGGACCGGGC GCTGTTCGAG TCGGAGAACC GCCGACTCGT CTCCGAGGGC
GGCGAGCCCG CCGCTGGCCG TCCGGTGCTG ATGGGTATCA CCAAGGCCTC TCTGGCCACC
GATTCCTGGC TCTCGGCGGC CTCCTTCCAG GAGACCACCC GGGTGCTGAC GGACGCGGCG
ATCCACGCCC GCAGCGACTC GTTGATCGGT CTCAAGGAGA ACGTGATCAT CGGTAAGCTC
ATCCCGGCTG GTACTGGCAT CAGCAAGTAC CGCAACGTTC GGGTCGAGCC GACCGAGGAG
GCGAAGGCCA AGGTCTACTC GATGACCGGT TACCCGGAGA CCGATTACGG CTTCGGACCG
GCCAGTGGCC AGGCGGTCCC GCTGGACGAC TTTGACTTCG GGTCGTACCG CTAG
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| Protein sequence | MLDVNFFDEL RIGLATADDI RQWSHGEVKK PETINYRTLK PEKDGLFCEK IFGPQRDWEC
YCGKYKRVRF KGIICERCGV EVTRSKVRRE RMGHIELAAS VTHIWYFKGV PSRLGYLLDL
APKDLEKIIY FASYVVTSVD AEARHRDLAT IENEILAEKR QSENSRDSEI EKRAGKLEAD
LAELEAEGAK ADVRRKVKEG GEREMRQIRD RAQREIDRLD EVLDTFRKLE PKQLVTDELL
YRELRDRFGE YFTGGMGAEA IKALVQNMDL DAEAESLRET IRTGKGQRKI RALKRLKVVA
AFLNTSNSPL GMVLDCVPVI PPDLRPMVQL DGGRFATSDL NDLYRRVINR NNRLKRLIDL
GAPEIIVNNE KRMLQEAVDA LFDNGRRGRP VTGPGNRPLK SLSDMLKGKQ GRFRQNLLGK
RVDYSGRSVI VVGPKLKLHQ CGLPKQMALE LFKPFVMKRL VDLNHAQNIK SAKRMVERQR
PVVWDVLEEV IGEHPVLLNR APTLHRLGIQ AFEPQLVEGK AIQIHPLVCT AFNADFDGDQ
MAVHVPLSAE AQAEARILML SSNNILKPAD GKPVTMPTQD MIIGLYHLTH RTPGERGEGR
AFSSDAEARM AFDNGELHLQ APVKIRLRGL VGVESGPGAE PWTAPEGWVE GDPITVETTL
GRVLFNETLP PGYRFVNYEI RKGQLSAIVN DLAERFPKVA LAATLDGLKE AGFHWATWSG
VTIGMEDVLA PPRKREILGR YEKEADRIDK QYQRGLMTAE ERRGELIEIW TKATNEVAKE
MDTALPQENP LWKMINSGAR GNLLQLRQIA AIRGLVANPK GEIIPRPIKA SYREGLSVLE
YFISTHGARK GLADTALRTA DSGYLTRRLV DVSQDVIIRE EDCGTDRAIP MQVGQQAGEA
GSLVVHEHAE TSVHARTLAD DIKGPDGTVV AERGADINSI LVDKIVAAGV ESVRVRSVLT
CESKLGVCGA CYGRSLPTGK TVDVGEAVGI IAAQSIGEPG TQLTMRTFHT GGVAGEDITQ
GLPRVQEIFE ARIPKGKAPI ADTPGRVRIE DGERSRKIIV VPDDGSDEIA YDKISKRVRL
LANDGDHVEV GERLTVGTID PHELLRILGP RAVQVHLTQE VQEVYRSQGV LIHDKHIEII
IRQMLKRVTV IDSGSTEFLP GVLVDRALFE SENRRLVSEG GEPAAGRPVL MGITKASLAT
DSWLSAASFQ ETTRVLTDAA IHARSDSLIG LKENVIIGKL IPAGTGISKY RNVRVEPTEE
AKAKVYSMTG YPETDYGFGP ASGQAVPLDD FDFGSYR
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