| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3896 |
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| Symbol | rpsD |
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| ID | 5060374 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | - |
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| Start bp | 4458296 |
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| End bp | 4458922 |
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| Gene Length | 627 bp |
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| Protein Length | 208 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640476153 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_001160704 |
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| Protein GI | 145596407 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTCGTT ACACCGGTGC TGACTGCCGC CGTTGCCGGC GGGAGAAGAT GAAGCTGTTC
CTCAAGGGCA GCAAGTGCGA TGGCCCGAAG TGCCCGTTCG AGTCCCGGCC GTTCCCGCCC
GGACAGCACG GCCGCGGCCG CACGAAGGAG ACGGAGTACC TGCTCCAGCT CCGCGAGAAG
CAGAAGGCCC GCCGGGTGTA CGGCGTGCTG GAGAAGCAGT TCCGCGGCTA CTACGAGGAG
GCCGTGGCGA AGCAGGCCAA GACCGGTGAG GTCCTCCTGC AGATCCTCGA GTCGCGGCTG
GACAACGTGG TCTACCGGGC CGGCTACGCC AAGTCCCGGG ACATGGCCCG GCAGCTGGTC
AAGCACGGTC ACTTCGTGGT GAACGGCAAG AAGGTCGACA TCCCGTCGTA CCGCGTCAAG
GAGCACGACA TCGTCGAGGT CCGGGGCAAG AGCAAGGAGC TCACCCCGTT CCTGGTGGCG
CAGGCCGAGT CCGGCTCCAA GAGCGTGCCG GCGTGGCTGG AGGCCATTCC GAGCCAGATG
AAGGTGCTCG TGCACTCGCT CCCGAGCCGC CAGGTGATCG ACACCCAGGT CCAGGAGCAG
CTGATCGTCG AGCTCTACTC CAAGTAG
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| Protein sequence | MARYTGADCR RCRREKMKLF LKGSKCDGPK CPFESRPFPP GQHGRGRTKE TEYLLQLREK
QKARRVYGVL EKQFRGYYEE AVAKQAKTGE VLLQILESRL DNVVYRAGYA KSRDMARQLV
KHGHFVVNGK KVDIPSYRVK EHDIVEVRGK SKELTPFLVA QAESGSKSVP AWLEAIPSQM
KVLVHSLPSR QVIDTQVQEQ LIVELYSK
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