| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3883 |
|---|
| Symbol | |
|---|
| ID | 5060361 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 4446309 |
|---|
| End bp | 4447901 |
|---|
| Gene Length | 1593 bp |
|---|
| Protein Length | 530 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640476140 |
|---|
| Product | thiamine biosynthesis protein ThiC |
|---|
| Protein accession | YP_001160691 |
|---|
| Protein GI | 145596394 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
|---|
| TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAAAC GTCGCAAGGT CTACGTCGAG GGGTCGCGGC CGGATATTCA GGTGCCGTTC
GCCGAGGTCG ACCTGACCGG AGACAATCCG CCGGTGCGGC TCTACGACAC TTCGGGGCCG
GGATCCGAAC CGGAGGTGGG GCTGCCGCCG ATGCGCGGCA AGTGGATCGC GTCTCGTGGG
GACGTCGCCC CGGTGCGGGG CGCCGGTACG CCGCTGGCGG GAGTGGACGG TCAGCGGCCG
ACCCAGCTGG CGTACGCCCG GTCGGGTGTG GTGACGCCGG AGATGGAGTT CGTGGCGATC
CGCGAGGGGG TCGCGCCGGA GCTGGTGCGG GAGGAGATCG CGACCGGCCG GGCCGTGCTG
CCGCTGAACG TCAACCACCC GGAGTGCGAG CCGGCGATTA TCGGCAAGGC GTTCCTGGTA
AAGATCAATG CGAACATCGG TACCTCGGCG GTCACCTCCT CGGTCGCCGA GGAGGTGGAG
AAGCTGACCT GGGCGACCCG GTGGGGCGCG GACGCCGTGA TGGACCTGTC GACCGGCAAG
CGGATCCACG AAACCCGCGA GGCGGTCGTA CGGAACTCCC CGGTGCCGAT CGGCACCGTG
CCGATCTACC AGGCGTTGGA AAAGGTGGGC GGCGATCCGG CGAAGTTGAG CTGGGAGGTG
TTCCGGGAGA CGGTCATCGA GCAGGCCGAG CAGGGCGTCG ACTACATGAC GGTGCACGCC
GGAGTGCTGC TGTCGTACGT GCCGCTCGCC GTGGAGCGGG TGACCGGGAT CGTCTCCCGT
GGTGGTTCGA TCATGGCAGC ATGGTGCCTG GCCCACCACG AGGAGAACTT CCTCTACACG
AACTTCCGGG AGCTCTGCGA GATCCTGGCC CGCTACGACG TGACGTTCTC GCTCGGCGAC
GGGCTGCGCC CCGGCTCCAT CGCGGACGCC AACGACGAGG CGCAGTTCGC CGAACTGAGG
ACCCTCGGTG AGCTGACGAA GGTCGCCTGG GAGCACGATG TCCAGGTGAT GATCGAGGGC
CCGGGGCACG TACCAATGCA CAAGATCAAG GAGAATGTGG ACCTTCAGCA GGAGTGGTGT
CACGAGGCGC CGTTCTACAC GCTCGGCCCA CTGAGTACGG ACATCGCGCC GGCGTACGAC
CACATTACGT CCGCCATCGG CGCGGCGATG ATCGGAATGT TCGGTACGGC GATGCTCTGC
TATGTCACCC CGAAGGAGCA CCTCGGGCTG CCGGACCGGG ACGACGTGAA GGCCGGCGTG
ATCGCGTACA AGATCGCTGC GCATGCCGCG GACCTGGCCA AGGGGCACCC GGGGGCCCAG
GCGTGGGACG ACGCGCTCTC CAAGGCACGA TTCGAGTTCC GCTGGGAGGA CCAGTTCAAC
CTCGCGTTGG ACCCGGAGAC CGCGCGCGCC TACCACGACG CCACCCTGCC CGCCGAACCG
GCGAAGACGG CCCACTTCTG TTCGATGTGC GGCCCGAAGT TCTGCTCCAT GAAAATCACC
CAGGAGCTAA AGGAGTACGC GGCGCGTGGC ATGAAGGACA AGTCAGAGGA GTTCGTAGCC
TCCGGCGGTC GCGTCTACCT TCCGCTGGCC TGA
|
|---|
| Protein sequence | MQKRRKVYVE GSRPDIQVPF AEVDLTGDNP PVRLYDTSGP GSEPEVGLPP MRGKWIASRG
DVAPVRGAGT PLAGVDGQRP TQLAYARSGV VTPEMEFVAI REGVAPELVR EEIATGRAVL
PLNVNHPECE PAIIGKAFLV KINANIGTSA VTSSVAEEVE KLTWATRWGA DAVMDLSTGK
RIHETREAVV RNSPVPIGTV PIYQALEKVG GDPAKLSWEV FRETVIEQAE QGVDYMTVHA
GVLLSYVPLA VERVTGIVSR GGSIMAAWCL AHHEENFLYT NFRELCEILA RYDVTFSLGD
GLRPGSIADA NDEAQFAELR TLGELTKVAW EHDVQVMIEG PGHVPMHKIK ENVDLQQEWC
HEAPFYTLGP LSTDIAPAYD HITSAIGAAM IGMFGTAMLC YVTPKEHLGL PDRDDVKAGV
IAYKIAAHAA DLAKGHPGAQ AWDDALSKAR FEFRWEDQFN LALDPETARA YHDATLPAEP
AKTAHFCSMC GPKFCSMKIT QELKEYAARG MKDKSEEFVA SGGRVYLPLA
|
|---|
| |