| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3826 |
|---|
| Symbol | |
|---|
| ID | 5060304 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 4383476 |
|---|
| End bp | 4384813 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 640476084 |
|---|
| Product | PspC domain-containing protein |
|---|
| Protein accession | YP_001160635 |
|---|
| Protein GI | 145596338 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1983] Putative stress-responsive transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAGG AAGCCGCCCG GCACCAGGCG ACCGGGGCGA CGCCACCACC CGCGGCGCCG
CCGGGTGAAC CGCCACCGCC CTGGGGAGCA GGCGGGGTCC CGCCCAGCGG GGACAGCGGC
TTCACCTCGC GGTACGGGCT GGTCCGTCCG CACGACGGCC GCTACCTGGC CGGCGTCTGC
GCGGCCATCG GCCGGGCGAC GAACACCGAC CCGGTGCTCT GGCGAGTGCT GCTCGCGGTG
CTCGGCTTCT TCGGCGGCAT CGGCATCCTG GTGTACGTCT CCGCCTGGCT GATCATCCCG
GGCGAGGGGG ACACCGCCTC ACCGGTCGAG TCGATGCTGG GCCGGGGACG CTCCAGCATG
TCCCCGGTCA CCGTGATCAT GCTCAGCATC CTGGTGGCCG TCATTTTCGC CTTCATCGTC
ACCGACGCGT TCCGGGCCGT GCTGCTCGGC GCGGCGATCC TGATCAGCGG TGCTCTGCTG
CTCAACCGCG AACGTCCGGG CCGGCCCGGA CCGACCGAGC CGCCGACCGA CCCGGTGCCA
CCGGTCAGCT ACCCCGCTCC GACCGGGGCT CCGGCGACCG GACCCGCCAC CGAGACACCA
CCCGCCGACA CGCGGCCGCC GGGCGGGGCA CGGGACGCGT TCGCCCCGCA CGGGCCGTAT
GCCCTACCAA CCCCGCCGCC CGCACCGCCG GCCCCCCGGC CGGCGCGGAA GCGACCGCGG
GAACGGTCCG CGCTCGGTGG GGTGACCTTC TCGCTGCTCT TCCTCGTCCT CGGACTGCTG
GCCGTGCTCG ACCTGACCGG CGTACTCTCT CCCGGCGCGT CCGGGTACTT CGCGGCGGTC
CTGGCCACCA TCGGCCTCGG CCTACTCGTC GGCACCTGGT TCGGCCGAGC CCGCTGGCTC
ATCGCGCTCG GCCTGGTCAC CGCCGCCGCG CTGGGGGTGG CCACCGTGGC TGAGTCCGAC
GACCGGTTCC GGGGAGTGAA CCAAGCGGTG ACCTGGGCTC CTACCAGCCA CGCCGAGCTC
GCCAGCCAGT ACGAGAACAC CGTCGGCAAC TCGCTGCTCG ACCTGCGCTC GGTGGACTTC
ACCGAGAGGC ACACCGAGAT CACGGTGGCG GTCACGGCCG GGGAGGCCAT CGTGGTGCTG
CCCCCGAACG TGGACGCCAC CGTCACCGCG ACCGTCAACG TCGGCGAAGC GGTCGTCTTC
GACCACCGTC ACTCCAAACG CGGCGGCGCC ACCGGTTCGC AGCGCGAGAG TACCGACCTG
GGGGCGGACG GCCCCGGCGG CGGGACGCTG CACCTTCTCG TTCACGTCGA CGTCGGCAGG
CTGGAGGTGA CCCGGTGA
|
|---|
| Protein sequence | MTEEAARHQA TGATPPPAAP PGEPPPPWGA GGVPPSGDSG FTSRYGLVRP HDGRYLAGVC
AAIGRATNTD PVLWRVLLAV LGFFGGIGIL VYVSAWLIIP GEGDTASPVE SMLGRGRSSM
SPVTVIMLSI LVAVIFAFIV TDAFRAVLLG AAILISGALL LNRERPGRPG PTEPPTDPVP
PVSYPAPTGA PATGPATETP PADTRPPGGA RDAFAPHGPY ALPTPPPAPP APRPARKRPR
ERSALGGVTF SLLFLVLGLL AVLDLTGVLS PGASGYFAAV LATIGLGLLV GTWFGRARWL
IALGLVTAAA LGVATVAESD DRFRGVNQAV TWAPTSHAEL ASQYENTVGN SLLDLRSVDF
TERHTEITVA VTAGEAIVVL PPNVDATVTA TVNVGEAVVF DHRHSKRGGA TGSQRESTDL
GADGPGGGTL HLLVHVDVGR LEVTR
|
|---|
| |