Gene Strop_3817 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_3817 
Symbol 
ID5060295 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp4372172 
End bp4374559 
Gene Length2388 bp 
Protein Length795 aa 
Translation table11 
GC content69% 
IMG OID640476075 
ProductATP-dependent DNA helicase PcrA 
Protein accessionYP_001160626 
Protein GI145596329 
COG category[L] Replication, recombination and repair 
COG ID[COG0210] Superfamily I DNA and RNA helicases 
TIGRFAM ID[TIGR01073] ATP-dependent DNA helicase PcrA 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.558809 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATCCTC TCTTTGACAT TCCCGTGCCC TCGTCCGCGC CCGACCCTGC TCCGCCGCGA 
CGACCCACTC CGGCGCGCCT CGACCCGCAG GCGCTGCTCG ACGGGCTGAA CGGCCCCCAG
CGGGAAGCGG TTACCCATGC CGGGTCACCG CTGCTCATCG TGGCCGGAGC CGGTTCCGGC
AAGACCCGGG TGCTCACCCA CCGGATCGCC TACCTGCTGG CGGCCCGACA GGTGCACCCA
GGCGAGATCA TCGCGATTAC CTTCACCAAC AAGGCCGCGG GCGAGATGAA GGAGCGGGTG
GCCCAGTTGG TCGGGCCGCG TGCTCGGTTG ATGTGGGTCT CGACCTTCCA CTCGGCGTGT
GTCCGCATCC TGCGGGCCGA GCACGAGCAT GCGGGTTTGA AGTCGACTTT CTCGATCTAT
GATGCCGACG ACTCCCGTCG GCTGATGCAG CTGGTCGCCC GGGAGTTGGA CCTCGACCCG
AAGCGCTACC CGGCGCGGGG GCTGGCCGCC CAGGTCTCGA ATCTGAAGAA CGAGCTGGTT
GACCCCGAGG AGTTCGCCGC CCGGGCCAAG GGGCCGAACG AGCGGGCACT CGCCGAGGCG
TACACGCTCT ATCAGCGGCG GCTCCGTGAG GCGCACGCGC TGGACTTCGA CGATCTGATC
ATGACGACGG TGCACCTGCT CCAGTCGCAT CCGCACGTCG CGGAGACCTA CCGGCGTCGG
TTCCGACACG TGCTGGTTGA CGAGTACCAG GACACCAACC ACGCCCAGTA CGTGTTGATC
AAGGAGCTGG TGTCGGGTAC CGACGGGCTT GACCCGGCGG AGCTCTGCGT GGTGGGTGAC
GCCGACCAGT CGATCTACGC GTTCCGGGGC GCGACGATCC GCAACATCCT GGAGTTCGAG
CGGGACTTCA CCGATGCTCG GACGATCCTG CTGGAACAGA ACTACCGCTC CACCCAGACC
ATCCTGAACG CGGCCAACGC CGTGATCGAC CGCAACACCT CCCGTAAGCC CAAGCGGCTG
TGGAGTGAGG CCGGGACCGG CGACCCGATC GTCGGCTACG TCGCCGACAC CGAGCACACC
GAGGCCGACT GGGTGGCCCG GGAGATCGAC CGGCTTGTGG ACGACGGCGA CACCCGGCCG
GGGGACGTGG CGGTCTTCTA TCGGACCAAC GCCCAGTCCC GGGTCTTCGA GGAGGTGTTC
ATCCGCGTCG GCCTGCCCTA CAAGGTCGTC GGTGGAGTCC GCTTCTACGA GCGTAAGGAG
GTCCGGGACG CCCTGGCCTA CCTGCGGGCG TTGGTCAACG AGGACGATAC GGTCAGCCTT
CGTCGGGTGC TGAACACTCC CCGCCGGGGC ATCGGGGATC GAGCCGAGGC ATGTGTCGAG
GCGCTTGCCA GCCGGGACCG GATCTCCTTC GGCGCTGCCC TTCGCCGGGC CAGGGACGCG
CCGGGCATCT CCACTCGGGC GGCGAACGGC ATCGCGGAGT TCGTCGCGCT GCTCGACGGT
GTCCGGGAGG TCGCGGAGAC CAGCGCGCCC GAGGAGGTGC TGGAGGCGCT GCTGAACCGG
TCGGGGTACC TGACCGAGCT GGAGGAGAGC CTGGACCCGC AGGACGCCGG CCGGGTCGAC
AACCTCCAGG AACTGGTCAG CGTCGCCCGG GAGTACACGG AACGGGTGGA GGGCCTGGGC
GAGGAGGGCG AGCGGGCCAC TGTCGCGGGC TTCCTGGAGC AGGTCGCGCT GGTGGCCGAC
GCGGACCAGT TGCCCGCCGA CGACCCGGAG CACCAGGGGG TGGTCACCCT GATGACGCTG
CACACTGCCA AGGGGCTGGA GTTTCCGGTG GTGTTCCTGA CCGGGATGGA GGACGGGGTC
TTCCCGCACG CCCGTACCTT CGGCGACAAC CACGAGTTGG AGGAGGAACG GCGTCTGGCG
TACGTGGGGA TCACCCGGGC CCGGCAGCGT CTCTACCTGT CTCGGGCGGT CACCCGCTCG
GCGTGGGGCC AGCCGGCCTA CAACGCGCCG TCCCGGTTCC TCGAGGAACT GCCCGCGGAG
TTGGTGCGCT GGGAGCGCAC CGAGGGCTCG TACACCTCGT GGGCCGGCGG CGGCGGAGGC
GTGGGCGGTC GCGCGGACCG GGGGCAGGGC GGCTTCACCG GTGGTACGCC GAAGGCCGCG
CAGCTCGCAC GTCGGCTCGG CGTTGACGGT AGTCGCCTCG CCACGGCCAG CGAGTTGCCG
TCAGCGCCCC CGCGGGTCGC GGTCGGAGAC CGGGTCAACC ACCAGCGGTA CGGGCTGGGT
CGGGTACTCA CGGTGGAAGG GCATGGTCCA GGTGCCCGTG CTCAGATCGA CTTCGGCGAC
CAGACGCTCT GGCTGGTCCT CCGGCACGCA CCGATCGATC GGCTGTGA
 
Protein sequence
MHPLFDIPVP SSAPDPAPPR RPTPARLDPQ ALLDGLNGPQ REAVTHAGSP LLIVAGAGSG 
KTRVLTHRIA YLLAARQVHP GEIIAITFTN KAAGEMKERV AQLVGPRARL MWVSTFHSAC
VRILRAEHEH AGLKSTFSIY DADDSRRLMQ LVARELDLDP KRYPARGLAA QVSNLKNELV
DPEEFAARAK GPNERALAEA YTLYQRRLRE AHALDFDDLI MTTVHLLQSH PHVAETYRRR
FRHVLVDEYQ DTNHAQYVLI KELVSGTDGL DPAELCVVGD ADQSIYAFRG ATIRNILEFE
RDFTDARTIL LEQNYRSTQT ILNAANAVID RNTSRKPKRL WSEAGTGDPI VGYVADTEHT
EADWVAREID RLVDDGDTRP GDVAVFYRTN AQSRVFEEVF IRVGLPYKVV GGVRFYERKE
VRDALAYLRA LVNEDDTVSL RRVLNTPRRG IGDRAEACVE ALASRDRISF GAALRRARDA
PGISTRAANG IAEFVALLDG VREVAETSAP EEVLEALLNR SGYLTELEES LDPQDAGRVD
NLQELVSVAR EYTERVEGLG EEGERATVAG FLEQVALVAD ADQLPADDPE HQGVVTLMTL
HTAKGLEFPV VFLTGMEDGV FPHARTFGDN HELEEERRLA YVGITRARQR LYLSRAVTRS
AWGQPAYNAP SRFLEELPAE LVRWERTEGS YTSWAGGGGG VGGRADRGQG GFTGGTPKAA
QLARRLGVDG SRLATASELP SAPPRVAVGD RVNHQRYGLG RVLTVEGHGP GARAQIDFGD
QTLWLVLRHA PIDRL