| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3752 |
|---|
| Symbol | |
|---|
| ID | 5060230 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 4300489 |
|---|
| End bp | 4301562 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640476010 |
|---|
| Product | succinyl-diaminopimelate desuccinylase |
|---|
| Protein accession | YP_001160561 |
|---|
| Protein GI | 145596264 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | [TIGR01900] succinyl-diaminopimelate desuccinylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0165343 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.317622 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAACC CGCTGACCCC CGAGGTCCTC GCTGATCCGG TGGCCCTGAC CCGCGCCCTG
GTCGATATCG AGTCCGTCTC CCGCAACGAG AGGGCGATCG CGGACTGTGT CGAGGATGTG
CTGCGCGTTG AGCCGCACCT GACCACCTAT CGGCACGGCA ACACCGTGAT GGCCCGTACC
AGCCTCGGCC GGGACCAGCG GGTGGTGCTC GCCGGCCACC TCGACACGGT CCCGATCAAC
AACAACTTCC CCGCCACGGT GCGCGGCGAC CTGATGTACG GCTGCGGCAC CTCGGACATG
AAGAGCGGTG TCGCGTACGC GTTGCACCTC GCGGTGACCC TGGCCGAGCC ACGGTACGAC
GTGACGTACT TCTTCTATGA GGCGGAGGAG ATCGAGTCGA CGTACAACGG TCTCTTCCTG
GTCTCCGAGG CACACCCGGA GTGGCTCGCG GCCGACTTCG CGCTGCTGCT GGAGCCGACG
TACGGGATCG TGGAGGCGGG CTGCCAGGGC ACCATGCGGG CAACCGTCAC CACCAGCGGC
GTACGGGCCC ACTCGGCGCG CTCCTGGCGC GGCGTCAACG CGATCCACGC CACCGGGGAG
GTGTTGCGTC GGCTCGAGGC GTACGAGGCC CGTCGGGTGA CTGTCGATGG TTGCGAATAC
CGGGAGGGGA TGAACGCGGT GCGCATCAAC GGCGGGGTCG CCGGCAACGT GGTGCCCGAC
CGCTGCACGG TCGAGGTCAA TTACCGGTTC GCGCCGGACC GTACCCCGGA GCAGGCCGAG
GCGCATGTGC GGGAACTGTT CGCCGACTTC GAGGTGGCGA TCACCGACCT GGCGCCCGGT
GCGATGCCGG GGCTGGAGGC CGCGCCGGCG CAGGAGTTTC TGGCCGCCGT CGGTACGGCA
CCGATCGGCA AGCTGGGCTG GACGGATGTC GCCCGCTTCG CGGCCTTGGG CACCCCGGCG
CTGAACTTCG GTCCGGGAGA CCCCAATTTC GCCCACCACC CGGACGAGCA CGTCGAGATC
GGGAAGATCC GCGACGGTGC GGCTGTGCTG CGTCGCTGGC TTTCGGCCGC CTGA
|
|---|
| Protein sequence | MKNPLTPEVL ADPVALTRAL VDIESVSRNE RAIADCVEDV LRVEPHLTTY RHGNTVMART
SLGRDQRVVL AGHLDTVPIN NNFPATVRGD LMYGCGTSDM KSGVAYALHL AVTLAEPRYD
VTYFFYEAEE IESTYNGLFL VSEAHPEWLA ADFALLLEPT YGIVEAGCQG TMRATVTTSG
VRAHSARSWR GVNAIHATGE VLRRLEAYEA RRVTVDGCEY REGMNAVRIN GGVAGNVVPD
RCTVEVNYRF APDRTPEQAE AHVRELFADF EVAITDLAPG AMPGLEAAPA QEFLAAVGTA
PIGKLGWTDV ARFAALGTPA LNFGPGDPNF AHHPDEHVEI GKIRDGAAVL RRWLSAA
|
|---|
| |