| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3749 |
|---|
| Symbol | |
|---|
| ID | 5060227 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 4295506 |
|---|
| End bp | 4298940 |
|---|
| Gene Length | 3435 bp |
|---|
| Protein Length | 1144 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 640476007 |
|---|
| Product | UvrD/REP helicase |
|---|
| Protein accession | YP_001160558 |
|---|
| Protein GI | 145596261 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.612436 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.203306 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGCAT ACCGGCTGGT ACGCCGGTCC GCCGGGCCGG CGGAGGCGCC CGCCCCGGCG
GGCGGGCATG CTCCGCGGGG CGAGCACGGT CGGTTGGGTG GGCGGATCGA CGACCCTCGG
CAGGCAGAGG TGACCGGACA CACCATCGGG CCGATGTTGG TGCTTGGCGG TCCGGGCACC
GGCAAGACCG CCACCCTGGT TGAGGCGGTC GCCGCGCGGG TCGCCGAGGG GGTGGATCCC
GAGCGCATCT TGGTGCTCAC CTTCAGCCGC CGACAAGCCA CCGGCCTGCG CCAGCGCATC
GAGGCCCGGA TCGCCGGCGG CGGTCACCGG GTGCTGCGGG AACCACTGGT GCGCACCTTC
CCGGCGTACG CGTTCGGGCT GCTGCGCCGG GCCGCCGCGG AGCGCGGCGA GCCATCGCCC
CGGCTGCTCA CCGGCCCCGA GCAGGATCTG ATCATTCGGG AGCTGCTGGA CCTGGTGGGC
GAGGAGCCGG ATGCCGATCC GGTGGGCTGG CCGGAGGACC TGCGCCCGGC CCTGCGTACC
CGCGCCTTCG CCGCCCAGCT GCGGGACCTG CTGATGCGGG CCGCCGAGCG TGGCGTCGGT
CCGGTGGAGC TGGCTCGGCT GGGCGAGCGG CTCGGTCGGG CCGACTGGCC GGCCGCCGCC
CGGTTCCTTC GGGAATACGT CGCCGTGCTC GCGCTGCGTG ATGTCGGCAA CCGCGGTTCG
ATCGCCTACG ACCCGGCCGA GCTGGTCCGC TCCGCCACCG GAATGCTGCT CGACGATCCG
GCGCTGCTGG CCGCGGAGCG GCGCCGGCTG GCGCACGTCT ACGTGGACGA GTACGCCGAC
ACCGACCCCG CCCAGCAGGA GCTGTTGGCG ACCGTGGCGG GGGGCGGCAA GGCGCTGGTC
GTCCTCGCCG ATCCCGACTC GTCCACGTAC GCCTTCCGTG GTGCCGACCC CGGCGGTGTG
GTGACCTTCC CGCACCGATT CCGGACCGCC TCCGGGGCAC CGGCCGCGCA GGTCGTCTTC
ACCACGTCGT ACCGGGCCGG TCCCCGGCTG CTGGCGGCGC ACGCGCGGCT GGCCCGCCGG
CTGCGCGGCC CGGCCACGCA CCGGCGGACG CGGGCGCTAC CCGCAGCGGC GGCGGGCGCG
GCGGAGGTCC GTACGTTCCG CTCCGCCGCC AGTGAGGCGG CCTGGCTGGC GCACGCGTTG
CGGGCGGCGC ACCTGCTCGA CGGGGTGCCC TGGTCGGAAA TGGCGGTGTT GGTGCGCTCA
ACCGGGCGAG CGTTGCCCTC GTTGCGGCGC GCCTTGCACG CCGCCGGGGT GCCCACCGTC
GTGCACGGTG AGGACCTGCC GCTGCACCTG CAACCGGCGG TCGCCCCGCT GTTGCTGCTG
TTGCGCTGCG CGCTTGCCCC GGACCGGCTC GACGAGGAGG CCGCGGTCGC CCTGCTGCAC
TCGCCGTTGG GTGGGGCGGA TCCGCTGGCG GAACGGCGGC TGCGGCAGGG GCTGCGGGTC
ATGGCTTTGG CCGCCGGTGA CCGCCGACCC TCCGGTGAGC TGATCGTCGA GGCGCTGCGG
GACCCGGCCG AACTGGCCGG TATCGACCGC CGGTGGGCGG AGCCGGCGCA GACGGTGGCC
GGTCTGTTGG CGGTCACCCG GGAGACGGCC GCCCGGCCGG GTGCCACCGC CGAGGAGGTG
CTCTGGGCGG TGTGGCGGGT CAGTGGCCTC GCCGAGCTCT GGTCGGCGGC GCTGGCCCGA
ACCCCGGCGG CGGCCGGGGA GGGGGAGGTC GCCCGGCGTC GTCGTGCCGA GGCGGCCGAC
CGGGACCTGG ACGCGGTGAT GGTGCTCTTC GACGCTGCGG CCCGGTTCAC CGACCGGCTG
CCCGGGGCGC GGGTCGAGGT CTTCCTCGAT CATGTGCTCG GGCAGGACCT GCCCGCCGAC
ACCCTCGCCC CGACCGCCGA CCGGGGCGAC GCGGTCCGGC TGCTCACCGC GCACGCCGCG
AAGGGGCTGG AGTGGGACCT GGTCGCCGTC GCCGGAGTGC AGGAGGGCGT CTGGCCTGAC
CTGCGGCTGC GTGGCAGTCT ACTCGGGTCG GAGCGCCTTG TGGACGTGCT CGCCGGCCGC
TCGGCCGGCG AGGGACGGCG GGTCTCCGTC GTTGGCCAGA CCTCGGCCCT GCTGGACGAG
GAACGACGGC TCTTCCACGT CGCGGTGACC CGGGCGCGAC GCCGGCTGAT GGTCAGCGCC
GTCGCCAGCG CCGCCGTCGG CGGCGACGAC CACGACGAGC AGCCGAGCCG ATTCCTGCAC
GAACTCGGCG TGGCCGACCC CCCGCCGGGC GGGGGCGGAG GACCGGACGG AGACGCGAGA
CCGGGCGAGG GCGCGGGATC GGACGGAGAC GCGGGACCGG GCGAGGACGC GGGATCGGAC
GACGCCCGGA CGGGCGCGTT GCCGCTCAGC CGGCCGCCCC GGGCGCTCAC GCTGGCGTCG
CTGGTGGCGG AGCTGCGTAC CGCGGTGACC GACCCGAGCG CGCCGGTGCT CCGGCGGCGG
GCGGCCGCGG CGGAGCTGGC CCGGCTCGCC GCCGAGGGGG TCGCCGGGGC GCACCCGGAT
GACTGGTGGG GGCTGCGTCC GCTCTCCGAC GAACGGCCGC TGGTCGCCGA CGGCGAGCCG
GTGCGGGTCA CTCCGTCCGG GATGGAGAGC GCTCTGCGGT GCAGCCTGCG CTGGCTGCTC
GAACGCCACG GCGGCGGCGC GCCGGCCAGC GCGGCGCAGG GGGTGGGAAA CCTGGTGCAC
GCCGCCGCGA TGCTGGCCGA GAACGCCAGC TCGGACCGGC GGGCGTTGCT CGACTACGTG
GCGGCCCGGT TCGACGCGAT CGAGTTGGCG GCCCGCTGGA TGGTCGGCCC GGAGCAGGCC
CGCGCCGAGG CGATGGTGGA CAAGCTGCTG CGTTGGCTGG CCACCAACCC GCGTCGGCTG
CTCGCCATCG AGCACGAGTT CGCCGTCCGA CTGGACGACT CACGCCACCC GGTTGACCTG
GTCGGCCGGG TGGACCGGCT GGAGGTCGAC TCGGACGGCC GGCTCGTGGT GGTTGACCTC
AAGACCGGCA AGTCGACTGC GGTGACCGCG GCAGACCTCA CCGAGCATCC CCAGCTGGGC
GCGTACCAGG CGGCGGTCGA GGCGGGCGCG TTCGCTGAGT TCGGGACGGA GTCCGGGGGA
GCATCCCTGG TGCAGCTCGG CACCGGCGCC AAGGAAGCCC GGGAACAGGC CCAGCCGCCG
GCCGGCGAGG GGCCGGCGGC CGGCTGGGCG ACCGCCCTGG TCCGGCGGAC CGCCGAGACG
ATGGCCGCCA CCACCTTTGC CGCGGTCGCC AACTCGAAGT GTCGGGTCTG TCCGGTGCGC
ACCAGCTGCC CGGTGTCCGG GCAGGGGCGT CAGGTCGTCG AGCCGCCGAG CACTCGCCCA
CCGGAGGGCC CGTGA
|
|---|
| Protein sequence | MQAYRLVRRS AGPAEAPAPA GGHAPRGEHG RLGGRIDDPR QAEVTGHTIG PMLVLGGPGT
GKTATLVEAV AARVAEGVDP ERILVLTFSR RQATGLRQRI EARIAGGGHR VLREPLVRTF
PAYAFGLLRR AAAERGEPSP RLLTGPEQDL IIRELLDLVG EEPDADPVGW PEDLRPALRT
RAFAAQLRDL LMRAAERGVG PVELARLGER LGRADWPAAA RFLREYVAVL ALRDVGNRGS
IAYDPAELVR SATGMLLDDP ALLAAERRRL AHVYVDEYAD TDPAQQELLA TVAGGGKALV
VLADPDSSTY AFRGADPGGV VTFPHRFRTA SGAPAAQVVF TTSYRAGPRL LAAHARLARR
LRGPATHRRT RALPAAAAGA AEVRTFRSAA SEAAWLAHAL RAAHLLDGVP WSEMAVLVRS
TGRALPSLRR ALHAAGVPTV VHGEDLPLHL QPAVAPLLLL LRCALAPDRL DEEAAVALLH
SPLGGADPLA ERRLRQGLRV MALAAGDRRP SGELIVEALR DPAELAGIDR RWAEPAQTVA
GLLAVTRETA ARPGATAEEV LWAVWRVSGL AELWSAALAR TPAAAGEGEV ARRRRAEAAD
RDLDAVMVLF DAAARFTDRL PGARVEVFLD HVLGQDLPAD TLAPTADRGD AVRLLTAHAA
KGLEWDLVAV AGVQEGVWPD LRLRGSLLGS ERLVDVLAGR SAGEGRRVSV VGQTSALLDE
ERRLFHVAVT RARRRLMVSA VASAAVGGDD HDEQPSRFLH ELGVADPPPG GGGGPDGDAR
PGEGAGSDGD AGPGEDAGSD DARTGALPLS RPPRALTLAS LVAELRTAVT DPSAPVLRRR
AAAAELARLA AEGVAGAHPD DWWGLRPLSD ERPLVADGEP VRVTPSGMES ALRCSLRWLL
ERHGGGAPAS AAQGVGNLVH AAAMLAENAS SDRRALLDYV AARFDAIELA ARWMVGPEQA
RAEAMVDKLL RWLATNPRRL LAIEHEFAVR LDDSRHPVDL VGRVDRLEVD SDGRLVVVDL
KTGKSTAVTA ADLTEHPQLG AYQAAVEAGA FAEFGTESGG ASLVQLGTGA KEAREQAQPP
AGEGPAAGWA TALVRRTAET MAATTFAAVA NSKCRVCPVR TSCPVSGQGR QVVEPPSTRP
PEGP
|
|---|
| |