| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3643 |
|---|
| Symbol | |
|---|
| ID | 5060118 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 4170587 |
|---|
| End bp | 4172137 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 640475898 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001160452 |
|---|
| Protein GI | 145596155 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.93603 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGTTGGC TGGACCAGGT CGGCGACCAG GTTGACACCC TGAAACGGGC ACGCGGGCTA
CAGGAGTCGA GCCGCTCCGC CGAGGCGTAC CGCATCCTCT CGGGCGTGCT CGCCACCACC
ACCGACCGGT ACGCCCGGGC CGACGCCCTG GTGCAACGCC TCTCCGCGGT GGTCAACCTG
GGTCGCACCG CGGAGTACAC CCGGGCCATC GAGGAGGCCA CCAGCGCCGT CCGGGACCTC
ACCGAGCCGT ACCCCCACGG GCACCTCCAC GCACTCGCCG CGCTCGCCGC CCACCACCAG
GGCGCCCTGG ACCGCTGTGT CATGCATCTG GTGCGGGCCG CTCGCGCGCT GGGCGCCGTC
GAGGACCCCG ACCGGGACAC CGCGTGGGGC TGGCACGACC TCGCGATGGC CTACTCCTAC
CTCAGCTTCC ACGGGTACGC GCTGGGCGCG ATCGAGCGGG CCCGACAGCT CGGGCTCGCC
GCCGGCATCC CGGCGGAGAC CTTCGCCGCC CCCGGGATCC GACTACGCAA CGCCGTCGCG
CTGGACCACA CCGGTGACAG CGACGGCTGC CTGCGGGTGC TCCGCGACGT CGCCAGCGAT
CTGGAGCAGT TCCTGCACAC CGGACAGGCC GGGCGGCTCC GCCCCAGCAG CCTCGCCGCG
TACGGCTACG CCGCAGCACG GCAGGCCGCC CTGGGTGACC GGCTGGAGGT GGGAACAGAC
GGCGCCCCGG CCCGTCTGCT GTGCCACGGC GGCGACAGTG CCCGGGCGCG CGACATGCTC
CAACTCGGCG AGGTCTGCCT GGCCATCGCG GCCGACCGCC CGATCGAGGC GGTCACCCGG
CTGGACACCG TGCAGGTCTC CACCGAGACC CTGGGCGCGG CCGAGCCCGA ACGGCTACGC
AGCATCGCGC TGGGCCGGGC CGGGGAACAC GTCGCCGCGC ACCGCGCCGA CCGGCGGGCG
TTCCGGCTCG CCGCGCACCG CAACGATCGG CTTCGGGACG TCTACATCGA CGGGATCGCC
GCCCGCATCG ACCACGAGGA GATGCGCCGC GAGGCCGCCC GCTTCGAGGG AGAGGCACTC
ACCGACCCGC TGACCGGGCT ACCCAATCGA CGCCGGCTCG AGCGGTACAT CGCCGCCGTG
ATGGCCCAGG GGAAACGGGT GGTGATCGGC GTCTGCGACC TGGATGGATT CAAGGCGGTG
AACACGTACC ACGGGCACCA CTCCGGCGAC CTGGTCCTGC AGCGCGTCGC GGGAGTGGTA
AACCGGGTGA TGCGGCGCGA CGACTTCGTG GCCCGCTACG GTGGCGACGA GTTCGTCGTG
GTGCTACCCG GTACGGACAT GGCCGAGGCG GAGGAGGTGG CGCGCCGGAT CAAGTCCGCC
GTGCGGACCG AGGACTGGGA GTCCCTCGTG CCCGGCACCC CGGTCGGGGT CAGCATCGGC
TTCGCCGAGG TGGCCGCCAC CGGCCCTGAC GTACCGGACG CCCTGAGCCT CGCCTTCGAG
ACCGCCGACC GGGAGATGCT ACGCGCCAAG ACCCGCCCCC GCGCCTCCTG A
|
|---|
| Protein sequence | MGWLDQVGDQ VDTLKRARGL QESSRSAEAY RILSGVLATT TDRYARADAL VQRLSAVVNL
GRTAEYTRAI EEATSAVRDL TEPYPHGHLH ALAALAAHHQ GALDRCVMHL VRAARALGAV
EDPDRDTAWG WHDLAMAYSY LSFHGYALGA IERARQLGLA AGIPAETFAA PGIRLRNAVA
LDHTGDSDGC LRVLRDVASD LEQFLHTGQA GRLRPSSLAA YGYAAARQAA LGDRLEVGTD
GAPARLLCHG GDSARARDML QLGEVCLAIA ADRPIEAVTR LDTVQVSTET LGAAEPERLR
SIALGRAGEH VAAHRADRRA FRLAAHRNDR LRDVYIDGIA ARIDHEEMRR EAARFEGEAL
TDPLTGLPNR RRLERYIAAV MAQGKRVVIG VCDLDGFKAV NTYHGHHSGD LVLQRVAGVV
NRVMRRDDFV ARYGGDEFVV VLPGTDMAEA EEVARRIKSA VRTEDWESLV PGTPVGVSIG
FAEVAATGPD VPDALSLAFE TADREMLRAK TRPRAS
|
|---|
| |