Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_3608 |
Symbol | |
ID | 5060083 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | - |
Start bp | 4131406 |
End bp | 4133094 |
Gene Length | 1689 bp |
Protein Length | 562 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640475863 |
Product | methylmalonyl-CoA mutase, large subunit |
Protein accession | YP_001160417 |
Protein GI | 145596120 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit |
TIGRFAM ID | [TIGR00641] methylmalonyl-CoA mutase N-terminal domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.898932 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.283748 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAACGCCG ACGAGATCGC CGCTGGACGG AGACGCTGGC AGGACCGCTA CGATGCCGCG CGCAAACGGG ACGCCGACTT CACCACGCTC TCCGGGATGA CTGTCGCCCC CGTGTACGGG CCGCCGGAGG GGGTGGATCA TCCCGGCTTT GAGCGGATCG GCTGGCCGGG CGAGTTCCCG TACACCCGTG GTCTACACCC GACCGGCTAC CGGGGGCGGG CCTGGACCAT CCGGCAGTTC GCCGGTTTCG GTAACGCCCG GCAGACCAAC GAGCGCTACA AGATGATCCT GGGCGCGGGG GGCGGCGGGC TCTCCGTCGC CTTCGACATG CCCACGCTGA TGGGTCGTGA CTCGGATGAC CCGCAGTCAC TCGGCGAGGT CGGGCACTGC GGGGTCGCGG TGGACAGCGC CGCGGACATG GAGGTGCTCT TCGACGGCAT CGACCTGGCC GGTGTCACGA CGAGTATGAC CATCTCCGGG CCGGCCGTCC CGGTGTTCTG CATGTATCTG ATCGCTGCCG AGCGGCAGGG CGCGGACCTC TCCCGCCTGG ACGGCACCCT GCAGACAGAC ATCTTCAAGG AGTACATCGC GCAGAAGGAG TGGCTCTTCG ACCCAGAGCC GCACCTGCGC CTCATCGGCG ACCTGATGGA GTACTGCGCT CGCGAGATTC CCCGCTACAA GCCGCTCTCC GTCTCCGGCT ACCACATCCG GGAGGCGGGC TCGACGGCCG CGCAGGAGCT GGCGTACACC CTCGCCGACG GCTTCGGCTA CGTCGAGCTG GGCCTCTCCC GCGGCCTCGA CGTGAACGTC TTCGCCCCGG GCCTGAGCTT CTTCTTCGAT TCCCATGTGG ACTTCTTCGA GGAGGTCGCG AAGTTCCGTG CCGCGCGCCG GATCTGGGCC CGCTGGCTGC GCGACGTCTA CGGTGCCACG AGCGAGAAGG CGCAGTGGCT GCGCTTCCAC ACCCAGACCG CCGGGGTCTC GCTGACCGCG CAGCAGCCGG TCAACAACGT GGTCCGGACG GCCGTGGAGG CCCTCGCGGC CGTGCTCGGC GGCACCAACT CGCTGCACAC CAACGCCCTC GACGAGACCC TCGCGCTGCC CACCGACGAG TCGGCCGAGA TCGCCCTGCG GACCCAGCAG GTGTTGATGG AGGAGACCGG GGTGACCAGC GTGGCCGACC CGTTGGGCGG CTCCTGGTAC GTCGAGGCGC TCACCGACAA GATCGAGGCC GAGGCGGAGG AGATCTTCGC CCGGATCCGG CAGCTCGGTG GCGAGGGGCC GCACGAGATC GGTCCGATGA CCTCGGGAAT TCTGCGGGGG ATTGAGGACG GTTGGTTCAC CGGACACATC GCCGAGGCGG CGTTCGCCTA CCAGCGGGCG CTGGAGAAGG GCGAGAAGAA GATCGTCGGA GTCAACTGTC ACACCGGCAC GGTCGCCAAG GACCTGGAGA TCCTGCGGAT CTCGCACGAG GTCGAGTTGG AGCAGCGGCG TACCCTCGGC GAGCGAAAGG CAGCCCGGGA TGACGCCGAG GTCAGCGCGG CGTTGGAGCG GATGGTCGCG GTCAGCCGGA CCAGCGGGAA CATGATCCCG GCCATGCTCG ACGCGGTCCG CGCCGAGGCG ACCCTGGGCG AGATCTGCGA TGCGCTGCGC CTCGAGTGGG GTGTCTACCG CGAACCGGCT CGCTTCTGA
|
Protein sequence | MNADEIAAGR RRWQDRYDAA RKRDADFTTL SGMTVAPVYG PPEGVDHPGF ERIGWPGEFP YTRGLHPTGY RGRAWTIRQF AGFGNARQTN ERYKMILGAG GGGLSVAFDM PTLMGRDSDD PQSLGEVGHC GVAVDSAADM EVLFDGIDLA GVTTSMTISG PAVPVFCMYL IAAERQGADL SRLDGTLQTD IFKEYIAQKE WLFDPEPHLR LIGDLMEYCA REIPRYKPLS VSGYHIREAG STAAQELAYT LADGFGYVEL GLSRGLDVNV FAPGLSFFFD SHVDFFEEVA KFRAARRIWA RWLRDVYGAT SEKAQWLRFH TQTAGVSLTA QQPVNNVVRT AVEALAAVLG GTNSLHTNAL DETLALPTDE SAEIALRTQQ VLMEETGVTS VADPLGGSWY VEALTDKIEA EAEEIFARIR QLGGEGPHEI GPMTSGILRG IEDGWFTGHI AEAAFAYQRA LEKGEKKIVG VNCHTGTVAK DLEILRISHE VELEQRRTLG ERKAARDDAE VSAALERMVA VSRTSGNMIP AMLDAVRAEA TLGEICDALR LEWGVYREPA RF
|
| |