| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3580 |
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| Symbol | |
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| ID | 5060055 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | - |
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| Start bp | 4096387 |
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| End bp | 4097385 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640475835 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001160389 |
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| Protein GI | 145596092 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGGGATGG CAAGGAACCG GGCAACCGGC GCGAGCGAGG GGACCGTGGG CAACGTGGAC
AAGAATAACG GCATGCGGAC CGACGAGGTC GCCGAGGAGC GCGACCTGGT CGGCGTCTAC
CTTCACGAGA TCTCCCGGAC GCCGTTGCTG GACGCCGCCA CGGAGGTCGA TCTTTCCAAG
GCGATCGAGG CCGGACTGTA CGCCGAGCAT CTGCTCGACG AGGACCGTGT GCCGGCCGGC
GTCGAGAAAG CAGAACTCCA ACGGCTGGTC GCTGAGGGGG CGCGGGCCAA GGACCTGTTC
ATCCGGGCCA ACCTGAGACT GGTCGTGTCG ATCGCCCGAC GGTATGTCCG TTCCGGGATG
CCCATGCTGG ATCTGATCCA GGAGGGCAAC ACCGGTCTGG TTCGGGCGGT GGAGAAGTTC
GACTACGAGC GCGGCTTCAA GTTCTCCACC TACGCGACCT GGTGGATCCG GCAGGCGATC
AGCCGGGCGA TCGCCCAGCA GGAGCGCACC GTGCGGCTAC CGGTGCACCT GGTGGAGGAT
GTCAACCGGA TGCGGAACGT GGCCCGGCAA CTCACCCGTG AGCTCGGCAG CGATCCCGAG
CCGGAGCAGA TCGCGACGGC GCTCGGCGTT ACCGTCGAGC GGGTCAACGA GCTGGTTCGT
TGGTCGCAGG ACACGGTGTC GTTGGATACC CCGGTCGGTG ACGACGGCGA CACCAACCTC
GGTGACCTTG TCGCCGACAG CGACGCGCCA TCACCGGAGG ACATCGTCCT GACCGGCCTG
GAGCGGCAGC GCATCGAGGG CCTCCTCAGT CACCTCGACG ACCGTTCGGC CGGCATAATG
CGGGCCCGGT ACGGCCTCGA GGACGGCCGG GAGCACTCGC TGACCGAGGT GGCCTCGCGC
TTCTCGCTCT CGCGGGAGCG GATCCGGCAG CTGGAGATTC AGGCGCTCGG ACGGCTGCGG
GAGCTGGCCC GCGCCGAGGG GCTCCAGGCA GCAGCCTGA
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| Protein sequence | MGMARNRATG ASEGTVGNVD KNNGMRTDEV AEERDLVGVY LHEISRTPLL DAATEVDLSK
AIEAGLYAEH LLDEDRVPAG VEKAELQRLV AEGARAKDLF IRANLRLVVS IARRYVRSGM
PMLDLIQEGN TGLVRAVEKF DYERGFKFST YATWWIRQAI SRAIAQQERT VRLPVHLVED
VNRMRNVARQ LTRELGSDPE PEQIATALGV TVERVNELVR WSQDTVSLDT PVGDDGDTNL
GDLVADSDAP SPEDIVLTGL ERQRIEGLLS HLDDRSAGIM RARYGLEDGR EHSLTEVASR
FSLSRERIRQ LEIQALGRLR ELARAEGLQA AA
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