| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3525 |
|---|
| Symbol | |
|---|
| ID | 5059999 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 4041912 |
|---|
| End bp | 4042967 |
|---|
| Gene Length | 1056 bp |
|---|
| Protein Length | 351 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640475779 |
|---|
| Product | 4-hydroxy-2-ketovalerate aldolase |
|---|
| Protein accession | YP_001160334 |
|---|
| Protein GI | 145596037 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR03217] 4-hydroxy-2-oxovalerate aldolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCGC TCTACCTCCA GGATGTGACG CTGCGGGACG GGATGCACGC CATCGCCCAC
CGCTACACCG TTGACCAGGT GCGGACGATC GCCGCCGCCC TCGACGCCGC CGGAATCGCC
GCCATCGAGG TGGCGCACGG TGACGGGCTG GCCGGGTCGA GTGTCAACTA CGGGCACGGC
GCGGCGAGCG ACGCCGAGTG GATCGCGGCG GCGGCCGAGG TACTGACCAC GGCGCGGCTG
ACCACGCTGC TGGTCCCCGG AATCGGCACC ATCGCCGACC TGAAGGCCGC GCGGGCCCTC
GGCGTGACCA GCGTTCGGAT CGCCACCCAC TGCACCGAGG CCGACATCTC CGCACAACAC
ATCGGCTGGG CTCGGGAGAA CGGGATGGAC GTCTCCGGGT TCCTGATGAT GGCCCACATG
AACGATCCGG TTGACCTGGC AGCGCAGGCC AAGCTCATGG AGTCGTACGG GGCGCACTGC
GTCTACGTCA CCGACTCCGG CGGCCGGCTC CTGATGTCCG ACGTGGCCGA GCGGATCGAC
GCCTACCGTC AGGTACTCGA ACCGGAGACG CAGATCGGCA TCCACGCCCA CCACAACCTC
TCGCTCGGTG TGGCCAACAG CGTGGTCGCG GTGGAGCACG GCCGGATCCT CGGGGACGGG
CCGCTGGGCA CACCGGTTGG CCGAACCGTC CGGGTCGACG CCTCCCTCGC CGGGCAGGGT
GCGGGCGCGG GTAACGCACC GCTGGAGGTC TTCGTCGCGG TCGCCGAGTT GCACGGCTGG
GAGCACGGCT GCGACGTCTT CGCGCTGATG GACGCGGCCG AGGACGTGGT CCGGCCGTTG
CAGGACCGAC CGGTGCGGGT GGACCGGGAG ACGCTCTCGC TGGGCTACGC CGGGGTCTAC
TCCAGCTTCC TGCGGCACGC TGAGCGGGCC GCCGAACGCT ACGGCGTGGA CGTCCGCTCG
ATTCTGGTCG AGCTGGGCCG GCGCCAGATG GTCGGTGGCC AGGAGGACAT GATCGTGGAT
GTGGCGCTGG ACCTGGCTGG CAAGGAGGAG ACGTGA
|
|---|
| Protein sequence | MTPLYLQDVT LRDGMHAIAH RYTVDQVRTI AAALDAAGIA AIEVAHGDGL AGSSVNYGHG
AASDAEWIAA AAEVLTTARL TTLLVPGIGT IADLKAARAL GVTSVRIATH CTEADISAQH
IGWARENGMD VSGFLMMAHM NDPVDLAAQA KLMESYGAHC VYVTDSGGRL LMSDVAERID
AYRQVLEPET QIGIHAHHNL SLGVANSVVA VEHGRILGDG PLGTPVGRTV RVDASLAGQG
AGAGNAPLEV FVAVAELHGW EHGCDVFALM DAAEDVVRPL QDRPVRVDRE TLSLGYAGVY
SSFLRHAERA AERYGVDVRS ILVELGRRQM VGGQEDMIVD VALDLAGKEE T
|
|---|
| |