| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3445 |
|---|
| Symbol | |
|---|
| ID | 5059914 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 3952057 |
|---|
| End bp | 3953493 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640475694 |
|---|
| Product | 6-phosphogluconate dehydrogenase |
|---|
| Protein accession | YP_001160254 |
|---|
| Protein GI | 145595957 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0362] 6-phosphogluconate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00873] 6-phosphogluconate dehydrogenase, decarboxylating |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.468283 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0734674 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGGGC AGGCACAGAT CGGCGTTACC GGGCTGGCGG TGATGGGGCG CAACCTCGCC
CGGAACCTGG CCCGCAACGG CTTCGTCGTG GCGGTGCACA ACCGCTCCCC GGAACGGACC
CGCCGGCTGA TCGCCGAGCA CGGTGCGGAG GGACGGTTCG TCCCCACCGA CTCGCTGGCC
GACTTCGTCG CCGCGCTGGA GCGCCCGCGG GCGGTTATCA CGATGGTCAA GGCCGGTGCG
CCGACCGACG CCGTTATTGA CGAGTTGGTG CCGCTGCTCG ATGCCGGCGA CATCATCGTC
GACTGCGGCA ACGCCCACTT CGCCGACACC CGGCGGCGCG AGGAGGCGCT GCGCAAGCAG
GGGTTGCACT TCGTTGGCAC CGGTGTCTCC GGTGGCGAGG AAGGCGCGCT GTGGGGGCCG
AGCATCATGC CGGGCGGCTC GGACGAGTCT TACCAGAAGC TGGGGCCGAT CTTCGAACAG
ATCGCGGCGC AGGTGGACGG GGAGCCCTGC TGCCGTCATA TCGGGCCGGA CGGAGCCGGC
CACTTCGTCA AGATGGTCCA CAACGGCATC GAGTACGCCG ACATGCAGCT CATCGCCGAG
GCGTACGACC TCCTGCGGGC CGGGCTGGAG GCGACCCCGG CCGAGCTGGC GGAGATCTTC
CGGGAGTGGA ACTCCGGCGA GCTCGAGTCG TTCCTCATCG AGATCACCGC TGAGGTGCTC
GGACACACCG ACGCCAGCAC CGGGCAGGCC TTCGTGGACA TCGTGCTCGA CCAGGCGGAG
CAGAAGGGCA CCGGACGCTG GACCGTGCAG AACGCCCTGG ACCTGGGCAT CCCGATCACC
GGCATCGCCG AGGCGACGTT CGCGCGTTCC CTCTCCGGGC ACGCCGGCCA GCGAGCGGCC
ACCCGCCGCG CGTTCGCCGG CACGGAACCG ACCTGGCGGG TCGAGGATCG GGGCGCCTTC
GTGGAGGACG TTCGACGCGC GCTGCTGGCC AGCAAGATCG TCGCGTACGC ACAGGGCTTC
GACCACATTC GGGCCGGCAG CCAAGAGTAC GACTGGGACA TCGACCTGGG CGGCACCGCC
ACGATCTGGC GGGGCGGATG CATCATCCGG GCGAACTTCC TCGACCGGAT CCGGCAGGCG
TACGACGACC AGCCCGATCT GCCCACGCTC CTGGTGGCGC CGTGGTTCGC CGATGCCGTA
CGCGCCGGAT TGTCGGGGTG GCGGCGGGTG GTCGCCGAGG CTGCCCACGC CGGTGTGCCC
ACCCCCGCGT TCGCCTCGTC CCTGTCCTAC TTCGACGCCC TGCGCGCGAA CCGTCTACCG
GCAGCCCTGA TCCAGGGTCT GCGGGACAAC TTCGGCGCAC ACACCTACCG CCGAGTTGAC
CGCGACGGCT CCTTCCACAC GCTCTGGGCC GGTGACCGTA GTGAGGTCGA AGCCTGA
|
|---|
| Protein sequence | MNGQAQIGVT GLAVMGRNLA RNLARNGFVV AVHNRSPERT RRLIAEHGAE GRFVPTDSLA
DFVAALERPR AVITMVKAGA PTDAVIDELV PLLDAGDIIV DCGNAHFADT RRREEALRKQ
GLHFVGTGVS GGEEGALWGP SIMPGGSDES YQKLGPIFEQ IAAQVDGEPC CRHIGPDGAG
HFVKMVHNGI EYADMQLIAE AYDLLRAGLE ATPAELAEIF REWNSGELES FLIEITAEVL
GHTDASTGQA FVDIVLDQAE QKGTGRWTVQ NALDLGIPIT GIAEATFARS LSGHAGQRAA
TRRAFAGTEP TWRVEDRGAF VEDVRRALLA SKIVAYAQGF DHIRAGSQEY DWDIDLGGTA
TIWRGGCIIR ANFLDRIRQA YDDQPDLPTL LVAPWFADAV RAGLSGWRRV VAEAAHAGVP
TPAFASSLSY FDALRANRLP AALIQGLRDN FGAHTYRRVD RDGSFHTLWA GDRSEVEA
|
|---|
| |