| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3425 |
|---|
| Symbol | |
|---|
| ID | 5059894 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 3928956 |
|---|
| End bp | 3930854 |
|---|
| Gene Length | 1899 bp |
|---|
| Protein Length | 632 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640475674 |
|---|
| Product | DNA primase |
|---|
| Protein accession | YP_001160234 |
|---|
| Protein GI | 145595937 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0358] DNA primase (bacterial type) |
|---|
| TIGRFAM ID | [TIGR01391] DNA primase, catalytic core |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.236565 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACGGCG AGGAGGTGGC GGAGATGACG GGGCGGATCC GGGACGAGGA CATCGCGTTG
GTCCGCGAGC GCACCTCGAT CGCGGAGGTC ATCTCCGATA CGGTCACCCT GCGGTCTGCT
GGTGGCGGCA ACCTGAAAGG GCTCTGCCCG TTCCACGACG AGAAGAGCCC GTCGTTCAAC
GTGTCACCAG CCCGAAATGT CTGGTATTGC TTTGGCTGCG GCGCCGGCGG CGACGCCATC
AAGTTCCTGA TGGATGCCGA GCATCTCAGC TTCGTCGAGT CCGTCGAGCG GCTGGCCGCC
CGCGTCGGTC TGCAGCTCCG CTACGTGGCG ACCGACCACA CCACCCCCCG CGCTCGGCCG
CAGCAGGGGC AGCGGCAGCG GTTGGTCGCC GCGCACGCCG CCGCGGTCGA GTTCTATCGG
GCTCAGCTCA CCACCCCCGG AGCCCGACCG GCTCGCGAGT TCCTCGCCCG GCGTGGTTTC
GACAAGGCCG CTGCCGAGCG GTATGCCTGC GGCTTCGCGC CCGACGGGTG GGACCTGTTG
ACCCGCCACC TGCGTCAGCA GGGATTCAGC CACGATGAGC TGGTGACCGC CGGGCTGTCC
CGGCCGGCCC GGTCGGGCAG CCTCATCGAC CGGTTCCGTC GCCGGCTGCT CTGGCCCATC
CGGGACCTGA CCGGCGACGT CGTTGGCTTC GGTGCCCGCA AGCTCTTCGA CGACGACGAC
AGCCCGAAGT ACCTGAACAC CCCCGAGACG CCGATCTACA AGAAGTCCCA CGTCCTCTAC
GGCATCGACC AGGCCAAACG GGAGATCGCC AAGCAGGGCA AGGTCGTCGT GGTCGAGGGC
TACACCGACG TGATGGCCTG TCACCTGGCC GGGGTGCCGA CCGCCGTGGC GACCTGTGGC
ACCGCCTTCG GCACCGACCA CATCGGGGTG CTGCGTCGGC TGCTGCTGGA CACCGACGCC
GTTGCCGGGG AGATCATCTT TACCTTCGAC GGGGACGCGG CCGGGCAGAA GGCGGCGCTA
CGCGCCTTCG ACGACGATCA GCGCTTCGTC GGACGCACCT TCATCGCGGT CAGCCCGGAC
GGCATGGACC CTTGCGAGCT GCGGCTGGCC AAGGGAGAGC TGGCCGTTCG TGACCTGGTC
GCGAGCCGTG AACCGCTGGT CGACTTCGCG CTGCGGCACG TGATCGGCCG GCACGACCTC
GACACCGTCG ACGGCCGGGT GGAGGCGATG CGCCGGGCGG CCCCGCTGGT CGCCAAAATC
AAAGACCGAG AGAAGCGCCC AGAGTACGTC CGCAAGCTCG CCGGGGACCT CGGCATGGAG
ATCGAGCCGG TTCAGCGGGC CGTACTGGCT GCCGCCCACG CCCCCGGCAA GACCAACACC
GCGTCCCGCG GGGCCCCGGC ACAGCCGCAG TCGCCGTCAC CGGCGGACAG CCCACAGGTC
ACCGTCGAGC GGGAGGCGCT GAAGCTGGCC CTTCAGGCGC CGGTGCTCGC CGGGCCGATG
TTCGACGCCG TGGAGGCCAC GGAGTACCGC AATCCGGTGC ACGTCGCGGT CCGGGCGGCG
GTGGCGGCGG CTGGGGGAGC GGCGGCGGCT ACCGGTGGTG CGGTCTGGAT CGAGTCGGTC
CGCCACGCAT GCGAGGACCT CGCCGCCCAG GCGCTCGTCG GCGAGCTGGC TGTCGAGCCG
CTGCGAATCG ACGGCGAGCT CGATCCGCGC TACGTGTCGG TGACGATGGC CCGCCTCCAG
TGGGGAGCGG TGACCGGCCG GATCCGGGAG CTCAAGTCGA GAATTCAGCG GATCAACCCG
GTCAGCAGCA AGGACGAGTA CTTCGCCGCC TTCGGCGAGT TGCTGTCCCT CGAGCAACAC
GCCCGGGCGC TGCGTGAGCA GGCCGCTGGT GGGTTGTGA
|
|---|
| Protein sequence | MYGEEVAEMT GRIRDEDIAL VRERTSIAEV ISDTVTLRSA GGGNLKGLCP FHDEKSPSFN
VSPARNVWYC FGCGAGGDAI KFLMDAEHLS FVESVERLAA RVGLQLRYVA TDHTTPRARP
QQGQRQRLVA AHAAAVEFYR AQLTTPGARP AREFLARRGF DKAAAERYAC GFAPDGWDLL
TRHLRQQGFS HDELVTAGLS RPARSGSLID RFRRRLLWPI RDLTGDVVGF GARKLFDDDD
SPKYLNTPET PIYKKSHVLY GIDQAKREIA KQGKVVVVEG YTDVMACHLA GVPTAVATCG
TAFGTDHIGV LRRLLLDTDA VAGEIIFTFD GDAAGQKAAL RAFDDDQRFV GRTFIAVSPD
GMDPCELRLA KGELAVRDLV ASREPLVDFA LRHVIGRHDL DTVDGRVEAM RRAAPLVAKI
KDREKRPEYV RKLAGDLGME IEPVQRAVLA AAHAPGKTNT ASRGAPAQPQ SPSPADSPQV
TVEREALKLA LQAPVLAGPM FDAVEATEYR NPVHVAVRAA VAAAGGAAAA TGGAVWIESV
RHACEDLAAQ ALVGELAVEP LRIDGELDPR YVSVTMARLQ WGAVTGRIRE LKSRIQRINP
VSSKDEYFAA FGELLSLEQH ARALREQAAG GL
|
|---|
| |