Gene Strop_3406 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_3406 
Symbol 
ID5059873 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp3909243 
End bp3910682 
Gene Length1440 bp 
Protein Length479 aa 
Translation table11 
GC content65% 
IMG OID640475654 
Productparallel beta-helix repeat-containing protein 
Protein accessionYP_001160216 
Protein GI145595919 
COG category 
COG ID 
TIGRFAM ID[TIGR01376] Chlamydial polymorphic outer membrane protein repeat 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.525217 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCAGC AGAACCACAT CCACGAACCC GAACCGGAGC GCCCTGGCGC GGACCGGGCG 
AGGTCACGGC GGCGATGGTG GGCCGTCGGG CTCGCCAGCG TGGCCGGCCT GGCCCTCACC
ACCGTCGGAG TCGCCGCCAC CCCGGCCGCC GACGCCATCG GACGCACCCT CAGCGCCGAC
GACCGCTCCG ACAAACGTGA CCAGCCACAT GAAGGTGACC GCCGCGACGA CGACGGCGGC
AAACGTGACG ACGCCAAGAA CAAGAGCGAC GAGGGCAAGA ACGACAAGGG CAAGGGCGAC
AAGGGCAAGG GGAAGAAGAC GGCCACCCCC AAGGGCACCC CCGTGCCCTG CGACGCGGAC
GCGCTGATCG CCGCGATCAC CCTGGCCAAC GCCCGCGACG GCGCCGTGCT CGACCTCGCC
AAGGACTGCA CCTACCTGCT CACCGCCGAC ATCGACGGCA ACGGCCTGCC CGCCATCACC
GCCCCCATCA CCCTCAACGG CGGCAAGAAC ACCACCATCG AACGCGCCGC CGCCGTCGAC
CCGTTCCGCA TCCTCACCGT CGACACCGGC GGCAACCTCA CCCTCAACAA GCTGACCATC
ACCGGCGGCC AGACCGACAG CGACGGCGGC GGCATCCTCG TCAACCCGGC CGGCACCCTC
ACCACCAACC ACAGCACCAT CACCCGCAAC ATCACCAACG CCAATGGCGG CGGCATCGCC
AACAACGGCA CCACAACTCT CCACCACTCC ACCGTCAGCC GAAACATCTC CGGCACTACC
GGCGGCGGCA TCTTCAGCAC CGGTCTACTG ACCGTCAAAA AGTCCCACGT AGCTGACAAC
ACCGCCGGCG CCGCTGGTGG CGGCATCAAC AGCAATGAGG GCACGATGCT GGTTGAGCAC
AGCCGAATTA CCGGCAACCA GACTGCGACC AGCGCTGGCG GCGTGGAACT GTTCGGAGGA
ACCGGAATTG TCACGAAGAC CGAGATCACC AACAATACCG CCAGTGCAAC TGGCGGCGTT
CTGGCGAACT CCGGGCAGCT CACCCTCAGA GCAGTGGTCA TCGCCAACAA CACGGCGATA
TCGGGGCTGG CCGGCGGGCT GTCGGTGAAC CCCGCCACCA CCACGGTGGT CGAGGACAGC
ACCATCAAGA ACAACACCGC TGCCGCAAAC GGCGGTGGAA TCTTCAACTT CGATTCGCTG
GTATTGCGAA ACACGAAGGT CATCGGAAAC CAGTCAGGAA ACCAGGGAGG CGGAATCCTC
AACGGACCTA ACGCCACCCT CTCCCTCTTC GACACACAGG TGGTCAAGAA CATCGCCGTT
ACCGACGGTG GGGGCATCTT CAACAGCGGC GGCGTGGTGA ACCTGAACAC CGCCACCGGC
ACCATCGTCA TCAAGAACCG ACCCAACAAC TGCGTCGACG TACCCGGCTG CGCCGGATAG
 
Protein sequence
MNQQNHIHEP EPERPGADRA RSRRRWWAVG LASVAGLALT TVGVAATPAA DAIGRTLSAD 
DRSDKRDQPH EGDRRDDDGG KRDDAKNKSD EGKNDKGKGD KGKGKKTATP KGTPVPCDAD
ALIAAITLAN ARDGAVLDLA KDCTYLLTAD IDGNGLPAIT APITLNGGKN TTIERAAAVD
PFRILTVDTG GNLTLNKLTI TGGQTDSDGG GILVNPAGTL TTNHSTITRN ITNANGGGIA
NNGTTTLHHS TVSRNISGTT GGGIFSTGLL TVKKSHVADN TAGAAGGGIN SNEGTMLVEH
SRITGNQTAT SAGGVELFGG TGIVTKTEIT NNTASATGGV LANSGQLTLR AVVIANNTAI
SGLAGGLSVN PATTTVVEDS TIKNNTAAAN GGGIFNFDSL VLRNTKVIGN QSGNQGGGIL
NGPNATLSLF DTQVVKNIAV TDGGGIFNSG GVVNLNTATG TIVIKNRPNN CVDVPGCAG