Gene Strop_3265 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_3265 
Symbol 
ID5059730 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp3743744 
End bp3748027 
Gene Length4284 bp 
Protein Length1427 aa 
Translation table11 
GC content66% 
IMG OID640475513 
Productputative alpha-1,2-mannosidase 
Protein accessionYP_001160077 
Protein GI145595780 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3537] Putative alpha-1,2-mannosidase 
TIGRFAM ID[TIGR01180] alpha-1,2-mannosidase, putative 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.454408 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGGCAGAC ACCGGAGGGC GATCGCCATC GCGCTCGCCG CTGGCCTGGC GATACCGGGC 
ACCCAACTGC CGGCGGCGGC GGCACCGTCG CCCGACACCG ACTTCTTCTC CTCGTTCGAT
TCCGACGATT CGCAGCCGAC CTGGACCAAC ACCGTGGAAA CCGACGCGGC CGGAAAGTCC
AAAATGTTCG GCGTAACCGG AAGACCAGAT TCCGACGGAA TCCCCGGCAA CATCAATGAC
ACGATTGTCG ATGTAACCGC CAACGGCGAC AACCCGCCCA ACGAAACTGT CCGACGGGTC
ATCGACGGTG ACGCGTCCAC CAAATGGCTG GTCTTCGAGC CCACCGGTTG GATAGCGGCC
CAGCTCGAAA CGCCAGCGAC CGTGGTGCAC TACGCGCTCA CCTCCGCCAA CGACGTACCG
GAGCGGGACC CGCAGGACTG GGAGCTACAG GGGTCGACCG ACGGCGACAC CTGGGTCACC
CTCGACACCC AGACCGGGCA GGACTTCCCC GAACGGTTCC AGACCAAGGA GTACCGGTTC
AGCAACGACA CCGAGTACTC GCACTACCGC CTGGACATCA CGGCCAACCA CGGCACGGAC
ATCGTTCAAC TGGCGGATCT CCAGCTGTCC AACGGCGACA CCACCCCCAA GCCGCCGACA
CCGATGTACA GCGTCGTCGA CAACGGGCCC GCGGGAAGCC CCACCGCCAA GGCCAACGCC
GGCTGGAGCG GCGAACACGC GCTGCGCTAC TCAGGGGGAC AGACCGTTGA CGGGCGCGGC
TACGCCTACA ACAAGATTTT CGACGTTGAC ATCGATGTCA CCGCGACCAG CGAACTGTCG
TACCTGATCT TCCCCGAGCT GACCAAGGGT GATCTGGACT ATCCGAGCAC CTACGCCGCG
GTCGACCTCG CCTTCGACGA CGGCACCTAC CTCAGCGACC TGAACGCGGT CGACCAATAC
GGGTTCGATC TCCACCCATC GAAGCAGGGG ACCACGAAGT CGCTCTACGC CGACCAGTGG
AACATCAAAC GATCGTCCCT CGGCGACGTG GCCGCGGGGA AGCGGATCGA CCGGATTCTG
ATCGGGTACG ACAGCGACAC CGGCCCCGGC ACCTTCCGGG GCTGGGTGGA CGACATCCGA
GTGACCGGTA GCCCCGAGCG CCCCACCTAC GACCGGCTCT CCGACTACGC CTTGACCACC
CGGGGCACGA ACTCCACCTT TGACTTCTCC CGAGGAAACA CCTTCCCGGC GACGGCGGTG
CCGCACGGCT TCAACTTCTG GACGCCGATG ACCAACGCCG GCTCCAATAG CTGGCTCTAC
CAGTACCAAC GGGACAACAA CGCCGACAAC CGACCGACGA TCCAGGCGTT CACCGCCAGC
CACGAGCCCA GCCCGTGGAT CGGCGACCGG CAGACCTTCC AGGTCATGCC GTCGGCGGCC
ACCGACAAAC CGAACGCCAA CAGAACCGCT CGGGCCCTGG CCTTCCAGCA TGCCAACGAG
ACGGCCAAGC CCCACTACTA CGGCGTGACC TTCGACAACG GGCTCAAGAC GGAGATCGCT
CCCACCGACC ACGCCGCCAT GTTCCGATTC ACCTTCACCG GGGACCGCGG CAACCTGATC
TTCGACAATC TCAACAACCA GGGCGGTGTG ACCCTCAACT CCGACGGCAC CGTGACCGGC
TTCTCCGACA CCAGGCTGGG CAGCGGCGCC ACCCGCATGT TCGTCTACGG CACGGTGGAC
CGCCCCGTCG TCGCCCACGG CGGGTTGACC GGCGGCGGTG GCGACAATGT GACCGGCTAC
CTGGCCTTCG ACACGTCGAC GGCAAAGGTC GTGACACTGC GGATCGCGAC CTCGCTGATC
TCCCTCGACC AGGCTCGGAA GAACCTGGCG TTGGAGATCG CCGAGAACGA CACCTTCGAC
TCCGTCCGCG CCCGCGCCCA GGACCTCTGG GACGACAAGC TCAAGGTCAT CGAGGTCGAA
GGCGCCACCG ACGAGCAACT CGTGACCCTG TACTCCAACC TCTACCGACT GTTCCTCTAC
CCGAACTCCG CGCACGAGAA CGTCGGAACC GCGGACGCAC CGGAGTGGAA ACACGCCGTG
CAGTCCTCCA CCTCGAGCAC GCTCCCACCC GGGACCACAC CGACCGAGAC CGGCGCGGAC
GTCGTGGCCG GCAAGGTGTA CGTCAACAAC GGCTTCTGGG ACACCTACCG CACCACCTGG
CCGGCGTACG CGTTGTTCAG CCCCACCATG GCCGGCGAAC TCGTCGACGG CTTCGTCCAG
CAGTACAAGG ACGGTGGTTG GGTGTCGCGG TGGTCCGCCC CGGGCTACCG GAACCTGATG
ACCGGCACCA GCTCGGACGT CTCGTTCGCC GACGTGTACA CCAAGGGAGT GCGCAACTTC
GATGTCCGGG CCGCGTACGA CGCGGCAGTG CGCAACGCCA CCGTCGTGCC GCCGGGTAAC
CCCAACAACA GCAGCGTTGG CCGAAAGGGC CTACAGGACT CGATCTTCCG CGGGTACACG
TCGACGACGG TCTCCGAAGG GGTGTCCTGG GGGCTGGAAG GCTACATCAA CGACTTCGGC
ATCGCGAACA TGGCCGCCGA ACTGGCCGAC GACCCGGATA CCCCGGAGGC CGACCGGGCC
CGTTACCGGG AGGAGGCGGA GTACTTCCGC AGCCGGGCGC TGAACTACGT GCACGCGTTC
GACCCAGCGA TCGACTTCTT CCAGGGACGC GACGCGTCCG GGCAGTGGAA GTCGACACCG
GAGACGTACG AGCCGCACGT GTGGGGGCAC GAGCACGACT ACACCGAGAC CAACGGGTGG
AACTTCGCCT TCCACGTCCC GCACGACGGC GAAGGTCTCG CCAGCCTGTA CGGAGGACGG
GAGGCGCTGG CCGAGAAGCT GGACGAGTTC TTCGCCACGC CGGAGACGGG AACCTTCCCC
GGCTCGTACG GCGGGATCAT CCACGAGATG CGGGAAGCGC GGGACGTCCG GATGGGCATG
TGGGGCTTCA GCAACCAGGT GTCGCACCAC ATCCCCTGGA TGTACAACTA CGCCGGGCAG
CCTGCCAAGA CACAGAAGAT CGTGCGAGAG GTGTTGTCCC GTCTGTACCT CGGCAGTGAA
ATCGGCCAGG GGTACGCCGG CGACGAGGAC AACGGCGAGA CCTCGGCGTG GTACCTGTTC
AGCGCGCTGG GTCTCTACCC GCTCCAGGTG GGCAGCGAGA ACTACGTGAT CGGTTCACCG
CTGTTCACGA AGGCCACCGT GCGCCTGGAC AACGGCAAGA AGATCGTCGT CAACGCTCCG
AAGAACAGCG CCGACAACGT GTACGTGCAG GGGCTCAAGG TCAACGGAAA GCGACACGAC
CAGACCTGGA TCTCCCACGA CGTGCTGGCC GACGGCGCGG TGCTGGACTT CAGCATGGGC
TCTGACCCGT CCTCCTGGGG CACTGGCGAG AAGGCACTCC CCATGTCGCT CACCCCGTCG
GGCGAGGCTC CCCAGCCGTT GTCCGACACC CCGGTGACCG GTGGTCCGGC AGCACTGTCC
GACGACACCT CCACGACCAC GGCTCCGGTG GAGGCGCCGG TGCAGTGGGC GGTGGAGGGA
AGCCCGGAAA GGGTCACGCA CTACACCCTC ACGTCGGGGC CGGACGACGG CACCGACCCC
ACCGGCTGGA GCCTGCAGGG CTCCTACGAC GGCGACACCT GGACCACCAT CGACAGTCGT
GCGGGCGAGG AGTTCACCTG GCGGCTGCAG ACCCGGTCCT TCGCCGTTGA CCGGCCCGGG
CGGTACCTGC ACTACCGGCT CGCTCCGGAG GGCGGCACGG CTACCCCGGT CCTCGCCGAG
GTCGAATTGC TCGCCACGGC GTCACCGGAG TGCACGACGA CGGTGAGCGG CACCGTCAAG
GGGCCCCTGA AGGTCGACTC CGGGGTCACG TGCTTGTCCG GGGCGACGGT CAAGGGGCCG
GTTAAGGTGC AGGCCGGCGC CGCGCTCTAC GCGGTCGACT CGACCATCTC CGGTCCGGTC
GCCACCAACG GTGCCGAGGC GGTGGTGCTC CGGGAGGTCC AGATCGGTGG ACCGCTGGCG
GTGTCCCGGG TAACCGGCGA GGTGAGCATC GAACGCACCA CCGTCGCCGG ACCGGTGGCC
CTGACGAAAA ACCAGGCGCC GGTGATCGCG GCGGGGTCGG TCGGCGGACC GCTGTCGTGC
TCCCAGAACA CTGTCGCGCC CACCGACAAC GGCGTGCCGA ACTCGGTGAA GGGACCGACT
TCCGGACAGT GTAAGGACCT GTAG
 
Protein sequence
MGRHRRAIAI ALAAGLAIPG TQLPAAAAPS PDTDFFSSFD SDDSQPTWTN TVETDAAGKS 
KMFGVTGRPD SDGIPGNIND TIVDVTANGD NPPNETVRRV IDGDASTKWL VFEPTGWIAA
QLETPATVVH YALTSANDVP ERDPQDWELQ GSTDGDTWVT LDTQTGQDFP ERFQTKEYRF
SNDTEYSHYR LDITANHGTD IVQLADLQLS NGDTTPKPPT PMYSVVDNGP AGSPTAKANA
GWSGEHALRY SGGQTVDGRG YAYNKIFDVD IDVTATSELS YLIFPELTKG DLDYPSTYAA
VDLAFDDGTY LSDLNAVDQY GFDLHPSKQG TTKSLYADQW NIKRSSLGDV AAGKRIDRIL
IGYDSDTGPG TFRGWVDDIR VTGSPERPTY DRLSDYALTT RGTNSTFDFS RGNTFPATAV
PHGFNFWTPM TNAGSNSWLY QYQRDNNADN RPTIQAFTAS HEPSPWIGDR QTFQVMPSAA
TDKPNANRTA RALAFQHANE TAKPHYYGVT FDNGLKTEIA PTDHAAMFRF TFTGDRGNLI
FDNLNNQGGV TLNSDGTVTG FSDTRLGSGA TRMFVYGTVD RPVVAHGGLT GGGGDNVTGY
LAFDTSTAKV VTLRIATSLI SLDQARKNLA LEIAENDTFD SVRARAQDLW DDKLKVIEVE
GATDEQLVTL YSNLYRLFLY PNSAHENVGT ADAPEWKHAV QSSTSSTLPP GTTPTETGAD
VVAGKVYVNN GFWDTYRTTW PAYALFSPTM AGELVDGFVQ QYKDGGWVSR WSAPGYRNLM
TGTSSDVSFA DVYTKGVRNF DVRAAYDAAV RNATVVPPGN PNNSSVGRKG LQDSIFRGYT
STTVSEGVSW GLEGYINDFG IANMAAELAD DPDTPEADRA RYREEAEYFR SRALNYVHAF
DPAIDFFQGR DASGQWKSTP ETYEPHVWGH EHDYTETNGW NFAFHVPHDG EGLASLYGGR
EALAEKLDEF FATPETGTFP GSYGGIIHEM REARDVRMGM WGFSNQVSHH IPWMYNYAGQ
PAKTQKIVRE VLSRLYLGSE IGQGYAGDED NGETSAWYLF SALGLYPLQV GSENYVIGSP
LFTKATVRLD NGKKIVVNAP KNSADNVYVQ GLKVNGKRHD QTWISHDVLA DGAVLDFSMG
SDPSSWGTGE KALPMSLTPS GEAPQPLSDT PVTGGPAALS DDTSTTTAPV EAPVQWAVEG
SPERVTHYTL TSGPDDGTDP TGWSLQGSYD GDTWTTIDSR AGEEFTWRLQ TRSFAVDRPG
RYLHYRLAPE GGTATPVLAE VELLATASPE CTTTVSGTVK GPLKVDSGVT CLSGATVKGP
VKVQAGAALY AVDSTISGPV ATNGAEAVVL REVQIGGPLA VSRVTGEVSI ERTTVAGPVA
LTKNQAPVIA AGSVGGPLSC SQNTVAPTDN GVPNSVKGPT SGQCKDL