| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3248 |
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| Symbol | |
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| ID | 5059713 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salinispora tropica CNB-440 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009380 |
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| Strand | + |
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| Start bp | 3723525 |
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| End bp | 3725012 |
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| Gene Length | 1488 bp |
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| Protein Length | 495 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 640475496 |
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| Product | phytoene dehydrogenase-related protein |
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| Protein accession | YP_001160060 |
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| Protein GI | 145595763 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
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| TIGRFAM ID | [TIGR02734] phytoene desaturase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.242639 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.13988 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCGGA TCGTGATCGT CGGCGCCGGG GTGGGTGGCC TGGCCACCGC CGCCCGGCTG
GCCACCACCG GGCACCATGT CACCCTCCTC GAGCAGAGTG ACACGGTGGG CGGCAAGCTC
GGCCGGTACG TACACGACAC GCCCGCCGGC CCCTTCCACT TCGACACCGG GCCCAGCCTG
CTGACCCTGC CCCAGGTGTT CCACGACCTG TTCGAGACCA CCGGGGCGAA GCTCGACGAA
TACCTGGACC CGGTCCCGCT CGACCCGATC GTGCGGCACG TCTTCCCTCC GGGTGGGCCA
ACGCTCGACT CGTGCGCCGA CTCCGACGAG TTCGCCGCCC GCATCGCCGC GGCCTTCGGC
GAGCGGGCCG CGGCCCAGTG GCGGCGCCTC TGGCGACAGG CCGAGCGGGT CTGGACGGCC
TCCGAACGGG ATGTCCTGCG CCGCCGGATC GACTCGCCCC GGGACCTGGC GATGCTGGCC
TGGCGGCTGG GTGACCTGGC CGCTATCGGA CCGGGCCGTA CGCTACGGGG ACTGGGCCGC
GCCCACCTGT CCGACCCCCG GCTACGGATG CTGCTCGACC GGTACGCGAC GTACGCCGGA
ACTGACCCAC GTCGGGCGCC GGCGGCCCTC GTCGCCGTCC CGTACGCCGA GCTGACCTTC
GGCGGCTGGT ACCTACGCGG CGGCCTGAGC ACCCTGGCCG ACGCCCTGCT GACCCGCTGC
CTGGATCTCG GGGTGGTGGT ACGGACCGGC GTACGGGTCA CCCGGATCGA CGCGGCGGGT
GGACGGGTGC ACGGCGTACG CCTCGCCGGC GCGAGCGCCC CCGTGCCGGC CGATGTGGTG
GTGTCCAACG TTGACGCGCT CACCCTCTAC CGGGACCTGC TGCCCACCCC GCGACGGCTG
GCCGCGCTGA CCGACCGCAG CCTCGCCGGC TTCGTACTGC TGCTCGGCGT ACGTGGGGAC
TCCGGGTTGG CCCACCACAC CGTCTTCTTC CCCGACGCCT ACGACGACGA ATTCGATGCG
GTCTTCGGGG CACCCGGGCG GGGAGTCCGG GCACGCCCAG CCCCGGACCC GACGGTCTTC
GTCACCGTGG CCGCCGACGA GACGGTCCGC CCGGCCGGGC ACGAGGCGTG GTTCGTACTG
GTCAACGCCG CCCGGCAGGG CACCGCCGCC GGTGCTGTCG ACTGGCGACG CCCCGGCCTC
GCCGAGGCGT ACGCGGACCG GATCCTGGAC GTGCTGGCCG CGCGGGGGGT GGACGTACGG
GACCGGCTGC TGTTCCGGGA GATCCGTACG CCGGCCGACC TGGGCACTGC GACGGGCACA
CCGGGCGGAG CGATCTACGG CACCACGGGT GGCCTGCTTC GCCCGCCGAA CCGAGGGCCG
GTCCAGGGGC TGTGGCTGGT CGGTGGCTCC TGCCACCCGG GCGGGGGGCT GCCGATGGTC
GCCCTCTCCG CCCAGATCGT CGCCGACTCC ATCGGCCCCG CCTGGTAG
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| Protein sequence | MARIVIVGAG VGGLATAARL ATTGHHVTLL EQSDTVGGKL GRYVHDTPAG PFHFDTGPSL
LTLPQVFHDL FETTGAKLDE YLDPVPLDPI VRHVFPPGGP TLDSCADSDE FAARIAAAFG
ERAAAQWRRL WRQAERVWTA SERDVLRRRI DSPRDLAMLA WRLGDLAAIG PGRTLRGLGR
AHLSDPRLRM LLDRYATYAG TDPRRAPAAL VAVPYAELTF GGWYLRGGLS TLADALLTRC
LDLGVVVRTG VRVTRIDAAG GRVHGVRLAG ASAPVPADVV VSNVDALTLY RDLLPTPRRL
AALTDRSLAG FVLLLGVRGD SGLAHHTVFF PDAYDDEFDA VFGAPGRGVR ARPAPDPTVF
VTVAADETVR PAGHEAWFVL VNAARQGTAA GAVDWRRPGL AEAYADRILD VLAARGVDVR
DRLLFREIRT PADLGTATGT PGGAIYGTTG GLLRPPNRGP VQGLWLVGGS CHPGGGLPMV
ALSAQIVADS IGPAW
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