Gene Strop_3239 details

Gene Information

• Locus tag: Strop_3239
• Symbol: dnaE2
• ID: 5059704
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Salinispora tropica CNB-440
• Kingdom: Bacteria
• Replicon accession: NC_009380
• Strand: -
• Start bp: 3712867
• End bp: 3716241
• Gene Length: 3375 bp
• Protein Length: 1124 aa
• Translation table: 11
• GC content: 71%
• IMG OID: 640475487
• Product: error-prone DNA polymerase
• Protein accession: YP_001160051
• Protein GI: 145595754
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0587] DNA polymerase III, alpha subunit
• TIGRFAM ID: [TIGR00594] DNA-directed DNA polymerase III (polc)

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.023295
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 11
• Fosmid unclonability p-value: 0.114564
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAGCTTCT ACAACCCGGA TCTGCCGTGG TCAGAGCTGG AGCGGGTGCT CAGTGGCGAA 
TCCACCCGGG GGCAACGCCG TACCCGAGAC GGCCAGCGGC ATCTGCACGT GGTGGACCCG 
CTGGCGGTGG AGGCCGACGG CGGCGATGCT CCCGCACGGG CCGGTAGGCG TCCGCACCAC 
CCGCCGCCCG CGACAGCCCG CCCGGATGAT GTGGTGCCGT ACGCCGAGCT GCACACGCAC 
ACCAACTTCA GCTTCCTCGA CGGCGCCAGC CACCCGGAGG AGTTGGCCGA GGAGGCCGTC 
CGGCTGGGGC TCACCGCTCT CGCGGTGACC GACCACGATG GCTTCTACGG CGTGGTGCGC 
TTCGCCGAGG CGGCACGTGC CCTGCACCTG CCGACGGTCT TCGGCGCGGA GCTCTCCCTC 
GATCTGCCGG GCGCGCCCAA CGGCGAGCCG GACCCGCTCG GGCGGCACCT GTTGCTGCTC 
GCCCACGGCC ACGAGGGGTA CGCGCGGTTG GCCGCCACCA TCTCCCGGGC CCAGCTGCGC 
GGTGGCGAGA AGGGCCGCCC GATCTACGGG GAGTTGGCGG AGGTCGCGGC CGAGCTGCGG 
GACCACGTGC TGGTGCTCAC CGGCTGCCGC AAGGGTCACG TGCCGGCCGC GCTGCTCACC 
GAGGGAGTTG ACGCGGCAGC CCGGGAACTG GATCGGTTGA CCGCGCTGTT CGGTGCGGAG 
ACGGTCGCGG TGGAACTGAC CGACCACGGT CATCCGATTG ACGCCGACCG GAACGACGCC 
CTCGCCGAGC TGGCGGAGGC CGCCGGGCTG CCGACAGTGG CCACCAACAA CGTGCACTAC 
GCCACTCCGG GGCGGCGTCG GCTGGCCACC ACACTCGCCG CGGTCCGGGC CCGACGCAGC 
CTGGACGAGA TCGACGGCTG GCTACCCGCC GCCGGCGCCG CCCATCTGCG CAGCGGTGCC 
GAGATGGCGG CCCGGTTCGC CGCCTATCCG GGGGCCGTGG CCCGAGCCGC CGAGTTCGGC 
GCGGAACTCG CCTTCGACCT GCAGCTCGTC GCCCCGGCGC TACCGGCGTA TCCGGTGGCG 
TCCGGACACA CCGAGATGAG CTGGCTGCGT CATCTCACGG CGCGGGGGGC TCGAGAGCGC 
TACGGCCCAC CGGAGGCGCA CCCCGAGGCG TACGCGCAGC TTGAACATGA GCTGAACATG 
ATCGAGGAAC TGGGCTTTCC CGGCTACTTC CTGGTGGTCT ACGACATCGT CACGTTCTGC 
CGTGAGCAGG ACATCTACTG TCAGGGCCGA GGGTCGGCGG CGAACTCGGC GGTCTGCTAT 
GCGTTACGGA TAACCAACGT TGACGCAGTC CGCCACCGGC TGCTCTTCGA GCGCTTCCTC 
GCCCCGGAGC GGGATGGGCC ACCGGACATC GACGTGGACA TCGAGTCCTC CCGTCGGGAG 
GAGGTCATCC AACACGTCTA CGCCCGGTAC GGGCGGGAGC ACACTGCTCA GGTCGCCAAT 
GTCATCTCGT ACCGGCCCCG GTCGGCGGTG CGGGACGTGG CGAAGGCGTT CGGGTTCTCG 
CCCGGCCAGC AGGACGCCTG GAGCAAGCAG ATCGATCGGT GGGGTTCGGT CGCCGCGGCC 
GATGTCGAGG GCATCCCCGA GCCGGTGGTG GCGTACGCCG ACGCGGTGCA GACCTTTCCC 
CGGCACCTGG GCATCCACTC CGGCGGCATG GTGATCTGCG ACCGACCGGT GATCGAGGTG 
TGCCCGGTGG AGTGGGGGCG GATGCCCGGC CGGAGCGTGC TCCAGTGGGA CAAGGACGAC 
TGCGCCGCCG TTGGGCTGGT CAAGTTCGAC CTGCTCGGCC TCGGCATGCT CGCCGCGTTG 
CACCACGGCT ACGACATGAT CGGGGCGCGG CTCGAGCTGG GCGACATGAC TCTGGATGAC 
GACGAGGTCT ACGACATGCT CTGCCGAGCC GACGCGGTCG GGGTGTTCCA GGTGGAGAGC 
CGCGCTCAGA TGGCCACCCT GCCCCGGCTC AAACCCCGCT GCTTCTACGA CCTGGTGGTG 
GAGGTGGCGC TGATCCGGCC TGGCCCGATC CAGGGCGGCT CGGTGCACCC GTACATCCGG 
CGTAAGAACG GCCAGGAACC GGTCACCTTC CCGCATCCGC TGATGCGCAA CGCGCTGGAG 
AAGACCTTGG GCGTGCCGCT GTTCCAGGAG CAGCTCATGC AGCTCGCCAT CGACCTGGCC 
GGCTTCGACG CGGCCGAGGC GGACCAGCTG CGCCGGGCGA TGGGGGCCAA GCGGTCGGCG 
GAGCGGATGG CCAGGATCGC CGATCGGCTC TACGCCGGTA TGGCCGAGCG GGGCATCACC 
GGCGAGTTGG CCGACGATGT CTACCGCAAG CTCACCGCGT TCGCCAGTTA TGGCTTCCCG 
GAGAGCCACG CGATGAGCTT CGCCTATCTG GTCTACGCCA GTTCCTGGCT CAAGCGGTAC 
CACCCGGCGC CGTTTCTGGC CGCGCTGCTC AACGCCCAAC CGATGGGGTT CTATTCGCCG 
CAGACCCTGG TGGATGACGC TCGTCGGCAC GGGGTGGAGG TCCGTCGGCC GGATGTCAAT 
GCCAGCGGTG CCGGGGCGGT CCTGGAGTCC ACCCCGAGCA CCCGTTGGGG AAGCCAGCCG 
GGGGAGCCGC CGCACGCGTG GGGGCTGGGT GGTCCGGCGG TTCGGCTCGG GCTGGACAGT 
GTGCGTACGC TCGGTGGGGA GGTGGCCGGG CGAATCGAGA CCGAGCGGGC AGCGCGTGGG 
CCGTATCGGG ATATGTCGGA CCTGGCCCGG CGGGTGGGTC TGACCGCCGC GCAACTGGAG 
GCGCTTGCCA CCGCGGATGC CTTCGCGTGT TTTGGCGTGA CCCGGCGGCA GGCACTCTGG 
AGCGCTGGGG CGGCAGCCCA GGAGCATCCC GACCGCCTGC CCGGCACCGT GCCCGGCACG 
GTCGCGCCGA CGCTGCCCGG GATGGGGGCG GTCGATCGTC TCGTCGCGGA TGTCTGGGCG 
ACGGGGCTGT CGCCGGAGAG CCATCCGGCC CGGTTCGTCC GAGAACAGCT CGACGCCCTG 
GGGGCGGTGC CGATCGCCCG GCTCGCGCGG GTGGAGCCGG GTCGGCGGGT TCGGGTTGGC 
GGGATCGTCA CCCACCGGCA GCGTCCGGCA ACCGCGGGTG GGGTCACCTT CCTCAACCTG 
GAGGACGAGA CGGGGATGCT CAATGTCACC TGTTCCCCTG GGTTGTGGCA GCGCTACAGG 
CAGGTGGCGA AGAACAGCGG GGGGCTGGTG GTTCGGGGTC TCCTCCATCG GCACGAGGGG 
GTGATCAATT TCACCGCTGA CCGGTTGGAC CCGATTGAGC TCCCGGTCCG TCCGGCCGCC 
CGCGACTTTC GGTGA 

 

Protein sequence

MSFYNPDLPW SELERVLSGE STRGQRRTRD GQRHLHVVDP LAVEADGGDA PARAGRRPHH 
PPPATARPDD VVPYAELHTH TNFSFLDGAS HPEELAEEAV RLGLTALAVT DHDGFYGVVR 
FAEAARALHL PTVFGAELSL DLPGAPNGEP DPLGRHLLLL AHGHEGYARL AATISRAQLR 
GGEKGRPIYG ELAEVAAELR DHVLVLTGCR KGHVPAALLT EGVDAAAREL DRLTALFGAE 
TVAVELTDHG HPIDADRNDA LAELAEAAGL PTVATNNVHY ATPGRRRLAT TLAAVRARRS 
LDEIDGWLPA AGAAHLRSGA EMAARFAAYP GAVARAAEFG AELAFDLQLV APALPAYPVA 
SGHTEMSWLR HLTARGARER YGPPEAHPEA YAQLEHELNM IEELGFPGYF LVVYDIVTFC 
REQDIYCQGR GSAANSAVCY ALRITNVDAV RHRLLFERFL APERDGPPDI DVDIESSRRE 
EVIQHVYARY GREHTAQVAN VISYRPRSAV RDVAKAFGFS PGQQDAWSKQ IDRWGSVAAA 
DVEGIPEPVV AYADAVQTFP RHLGIHSGGM VICDRPVIEV CPVEWGRMPG RSVLQWDKDD 
CAAVGLVKFD LLGLGMLAAL HHGYDMIGAR LELGDMTLDD DEVYDMLCRA DAVGVFQVES 
RAQMATLPRL KPRCFYDLVV EVALIRPGPI QGGSVHPYIR RKNGQEPVTF PHPLMRNALE 
KTLGVPLFQE QLMQLAIDLA GFDAAEADQL RRAMGAKRSA ERMARIADRL YAGMAERGIT 
GELADDVYRK LTAFASYGFP ESHAMSFAYL VYASSWLKRY HPAPFLAALL NAQPMGFYSP 
QTLVDDARRH GVEVRRPDVN ASGAGAVLES TPSTRWGSQP GEPPHAWGLG GPAVRLGLDS 
VRTLGGEVAG RIETERAARG PYRDMSDLAR RVGLTAAQLE ALATADAFAC FGVTRRQALW 
SAGAAAQEHP DRLPGTVPGT VAPTLPGMGA VDRLVADVWA TGLSPESHPA RFVREQLDAL 
GAVPIARLAR VEPGRRVRVG GIVTHRQRPA TAGGVTFLNL EDETGMLNVT CSPGLWQRYR 
QVAKNSGGLV VRGLLHRHEG VINFTADRLD PIELPVRPAA RDFR