| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3229 |
|---|
| Symbol | |
|---|
| ID | 5059694 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 3698993 |
|---|
| End bp | 3700459 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640475477 |
|---|
| Product | putative monovalent cation/H+ antiporter subunit D |
|---|
| Protein accession | YP_001160041 |
|---|
| Protein GI | 145595744 |
|---|
| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0651] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.121013 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGTCC TGCTGATTGT TCCGGTGGTG GGTCCGTTAC TCGCCGCCGC CGTGCTGTTC
GCTGTCCCGG ACCGGCTGGT GCTGCGCCGG GTGGTGGCGC TGCTCGCCAC GGCGGCCGTC
ATTGCGGTGG GTGTCGTCCT GCTGGTGGTG ACGTCCGACG GCGAGGTCCC GGTGCTCCGG
GTCGGCGGCT GGCCGCCGGT TGTCGCGATC ACCTTGGCGG CCGACCCACT GAGCGCGTTG
CTGGTCACGG TCTCGGCGAT CGTGGTGCTG GCCTGCCTGG TGGCCGCCGC CGGGACCGGG
GACGACCGCC GACAGGCCTT CCTGCCGTTG ACGATGGTGC TGTCGGCGGG CGCATACGGC
GCCTACCTCA CCACCGATCT GTTCAACCTG TTCGTGCTGG TCGAGGTCAC GCTTGTCCCG
TCCTACGTGT TGTTGGCACT CTCCGGCGGC CCGGGGCGCG CCGGCGCGGG CCGGGTGTAC
ATCGCCACCA ATCTGCTCGG CTCCACGATC CTGCTCGCCG GCGTCGGACT GCTCTACGGG
GTCGCCGGCA CGGTCGGGCT CGGGGACCTC GCCGGCGTGG CCCGTGAGGT CCCCGCCGCC
GCGGTCGCCG GCGGTGTCGT GCTGCTGGCG TTCGCGCTCA AGGGCGCGCT CGTGCCGCTG
CACGACTGGC TGCCGCGCGC CTACCCGGTC GCGTCACCGG TGGTTGTCGC GCTCTTCTCC
GGTCTGCTCA CCAAGGTGGG GCTGTACGCG ATCATCCGGA TCTACGCCGT GTTGTACGGC
GGTGACCCGG CATACCATCC GTTGTTGGTG GCGGCGGCGC TGGCGTCCAT GGTGATCGGG
GTCCTCGGCG CGATCGGCGT CGGTTCGATG CGGAAGGTGC TGGCCTTCCA CATGGTGAGC
CAGATCGGGT ACGTGCTGCT TGGGCTGGCC CTGTTCACCG CCGCGAGTCT CGCCGCCGCC
GTCTTCTACC TGGCCCAGTA CGTGCTGGTG AAGGCGGCGC TGTTCTTGTG CGCGGCGGCG
GTGCGGGCCA CCCGCGGCAC CGACCGGTTG AGCCGGCTGG GTGGGCTGGC CTCATCCAGC
CCGCTGCTCG CGTTGGCCTT CGGCGTCGCT GCTCTGTCGC TGGCCGGTCT GCCTCCGTTC
GGCGGGTTCC TCGCCAAGTT CCTGGTGCTG CGGGCCGCCA ACGAGGTCGG TGATTGGCTC
GTGCTGACGG TGGCGGTGTT GGTCAGCCTG GTGACGCTGC TGTCGATGCT GAAGATCTGG
GGGGTCGTGT TCTGGGGTGA GGTGCCGCGG GCGGCCCGGG AGCGGACCGC CCGCCCCGGC
GCGGCGCTGC TCGGACCGCC GTTGGCGCTC GGCGTGTGCG CGCTGCTGCT CGGGCCGTTG
GGCGGGCCGC TGTTGCAGGT GGCCGACGCC GCCGCGGCGG GGCTACTGGA GCCGGCGGGG
TATGTGCGGG CGGTGAGCGG ACGATGA
|
|---|
| Protein sequence | MSVLLIVPVV GPLLAAAVLF AVPDRLVLRR VVALLATAAV IAVGVVLLVV TSDGEVPVLR
VGGWPPVVAI TLAADPLSAL LVTVSAIVVL ACLVAAAGTG DDRRQAFLPL TMVLSAGAYG
AYLTTDLFNL FVLVEVTLVP SYVLLALSGG PGRAGAGRVY IATNLLGSTI LLAGVGLLYG
VAGTVGLGDL AGVAREVPAA AVAGGVVLLA FALKGALVPL HDWLPRAYPV ASPVVVALFS
GLLTKVGLYA IIRIYAVLYG GDPAYHPLLV AAALASMVIG VLGAIGVGSM RKVLAFHMVS
QIGYVLLGLA LFTAASLAAA VFYLAQYVLV KAALFLCAAA VRATRGTDRL SRLGGLASSS
PLLALAFGVA ALSLAGLPPF GGFLAKFLVL RAANEVGDWL VLTVAVLVSL VTLLSMLKIW
GVVFWGEVPR AARERTARPG AALLGPPLAL GVCALLLGPL GGPLLQVADA AAAGLLEPAG
YVRAVSGR
|
|---|
| |