| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3222 |
|---|
| Symbol | |
|---|
| ID | 5059687 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 3691967 |
|---|
| End bp | 3693214 |
|---|
| Gene Length | 1248 bp |
|---|
| Protein Length | 415 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640475470 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001160034 |
|---|
| Protein GI | 145595737 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0769] UDP-N-acetylmuramyl tripeptide synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0406463 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCTAC GGGCGAAGGT GGCCAGCTCT GTGTCGCGGA CCGCCGCGGC CCTGTCGCGG
GCCGCGGGCC GCGGGGACGG CTCGGTCATC GGCGGTTGGA TCGGTCTCAA GATCGACCCG
GAGCTACTCG CGCACCTCGC CGCGGGCCGC GCCATCGCCC TGGTCTCCGG CACCAATGGC
AAGACCACGA CCACCCGACT CGCCACCGCC GCGGTCGGCG TACTCGGCAA GGTCGCCACC
AACTCCTTCG GCGCGAACAT GCCCACCGGG CACACCTCGG CGCTCGCCAA GGCCGGCAGC
ACCCCGTACG CGGTGCTCGA GGTGGACGAG CACTATCTCG CGCAGGTGCT GGACGCCACG
GACGCCCACG TGGTGGCGCT CCTCAACCTC TCCCGCGACC AGCTGGACCG GGCCCGGGAG
GTCGCCATGA TGGCGCAGCT CTGGCGCGCG GCGTTGATCC GCCACCCCGA GCTGCGGGTC
ATCGCCAACG CAGACGATCC GATGGTGGTC TGGGCCGCCA GCCCGCCGAC CAATCACGAC
CAGCGCATCA CCCCGCCCCA GGTCGTCTGG TTCAGCGCTG GCCAACGCTG GCACGACGAC
TCCTGGGTCT GCCCCGAGTG CGGTTCGACC ATCGCCCGGC AGGACAACCA GTGGTGGTGC
ACCGGCTGCC CGCTGCGCCG GCCACAGCCG CAGTGGTCCG TCGAGGACGA CGGCGTGATG
GACCCGACCG GCGCCTGGCA CAAGGTCCAG CTCCAACTCC CGGGCACGGT CAATCTCGGC
AACGCCGCCA CCGCCCTCGC CGTCGCGGCC GAGTTCGGCG TACGACCGGT TGACGCCGTG
CTCAAGCTCG GCTCAGTCAC CTCGATCGCC GGCCGGTACG CACAGGTCGA GCGAGACGGG
CGGCTGATCC GCCTGCTGCT GGCGAAGAAC CCGGCCAGCT GGCTGGAGGC GTTCGACATG
GCCGACGAGG CGCCGACGCT GCTGTCCATC AACGCGCGCG ACCCGGACGG GCTGGACACC
TCCTGGCTCT TTGACGTCGA CTTCAGCCCC CTGCAGGGTC GGCAGGTGCT CATCACCGGC
GACCGAGCGT TCGACCTGGC CGTCCGACTC GACGTGAACA ACGTGCCGTT CCAGCACGTG
CGTACGTTCA CCGAGGCGAT CCAGTCGGTC CCGCCGGGCC GACTGGAGGT CATCGCGAAC
TACACCGCGT TCCAGGACAT CCGAGCGGAG TTGGACCGTG TTCTCTGA
|
|---|
| Protein sequence | MPLRAKVASS VSRTAAALSR AAGRGDGSVI GGWIGLKIDP ELLAHLAAGR AIALVSGTNG
KTTTTRLATA AVGVLGKVAT NSFGANMPTG HTSALAKAGS TPYAVLEVDE HYLAQVLDAT
DAHVVALLNL SRDQLDRARE VAMMAQLWRA ALIRHPELRV IANADDPMVV WAASPPTNHD
QRITPPQVVW FSAGQRWHDD SWVCPECGST IARQDNQWWC TGCPLRRPQP QWSVEDDGVM
DPTGAWHKVQ LQLPGTVNLG NAATALAVAA EFGVRPVDAV LKLGSVTSIA GRYAQVERDG
RLIRLLLAKN PASWLEAFDM ADEAPTLLSI NARDPDGLDT SWLFDVDFSP LQGRQVLITG
DRAFDLAVRL DVNNVPFQHV RTFTEAIQSV PPGRLEVIAN YTAFQDIRAE LDRVL
|
|---|
| |