| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3162 |
|---|
| Symbol | |
|---|
| ID | 5059627 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 3628992 |
|---|
| End bp | 3629966 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640475410 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001159974 |
|---|
| Protein GI | 145595677 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0228051 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTACAG TCGAACGGCC GGGGGCTGTT GCGGCCCCCC GAAATCTCGA CGACCACCTG
GTCCTCGACG TTCGGGACCT ACGCATGCGC TACGGCACCG TGGACGTGCT GAACGGCGTC
GACCTCACCG CCCAACGGGG CGAGGTGATC GCACTGCTCG GGCCGAACGG TGCCGGCAAG
ACCACCACCA TCGAGATCCT CGAGGGCTTC CGGCTGCCCT CAGCCGGCTC GGTCCGGGTA
CTCGGCGTTG ACCCCGCCAA CGGCGACGAG CGGTGGCGGG CCCAACTCGG CGTGGTGCTC
CAGTCCTGGC GGGACCACGG CCGGTGGCGG GTGCGGGAAC TCCTCTCCCA CCTCGGCGAC
TACTACGCGC CGTACGCGAC CGACCAGATC CAGCGCCCGT GGCCGGTGGA CGAACTGCTG
GCGGCCGTCG GCCTGACCGC ACACGCCGGT GCGCGGGTGT CCCGGCTCTC CGGCGGGCAA
CGTCGGCGAC TCGACGTGGC GGTCGGCATT GTGGGCCGGC CAGAGCTGCT CTTCCTGGAC
GAGCCGACGG TCGGCCTCGA CCCGGCTGCC CGACGCGAGT TCCACGAGCT CGTGCACCGC
CTCGCCGACC TGGACCACAC CACCATCCTG CTGACCACCC ATGATCTGGC CGAGGCGGAG
AAGCTCGCCG ACTCGATCGT CATCCTGGCC AACGGCCGGA TCATCGCGCA GGGCTCGCCG
GACCAGCTCT CCCGCCGGCT GACCACCGAT GCGGAGGTCC GCTGGACCTG CGACGGCGTA
CGCCACGTAC ACGCCACCAT GGACGCCACC GGCTTCCTGC GCGACCTGCT CGGCGACTAC
GGCGACCGGG TGCAGGAACT GGAGGTACGC CGAGCCAACC TGGAGGATGC GTACCTGGCC
CTGGTGCACG AGGAGGAGAC CGGAATCCGT ACCGGCTGGG CCGAACGGGT GTGGCAGCAG
CAGGAGGAGA ACTGA
|
|---|
| Protein sequence | MTTVERPGAV AAPRNLDDHL VLDVRDLRMR YGTVDVLNGV DLTAQRGEVI ALLGPNGAGK
TTTIEILEGF RLPSAGSVRV LGVDPANGDE RWRAQLGVVL QSWRDHGRWR VRELLSHLGD
YYAPYATDQI QRPWPVDELL AAVGLTAHAG ARVSRLSGGQ RRRLDVAVGI VGRPELLFLD
EPTVGLDPAA RREFHELVHR LADLDHTTIL LTTHDLAEAE KLADSIVILA NGRIIAQGSP
DQLSRRLTTD AEVRWTCDGV RHVHATMDAT GFLRDLLGDY GDRVQELEVR RANLEDAYLA
LVHEEETGIR TGWAERVWQQ QEEN
|
|---|
| |