| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3088 |
|---|
| Symbol | |
|---|
| ID | 5059552 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 3538520 |
|---|
| End bp | 3539548 |
|---|
| Gene Length | 1029 bp |
|---|
| Protein Length | 342 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640475338 |
|---|
| Product | protoheme IX farnesyltransferase |
|---|
| Protein accession | YP_001159903 |
|---|
| Protein GI | 145595606 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0109] Polyprenyltransferase (cytochrome oxidase assembly factor) |
|---|
| TIGRFAM ID | [TIGR01473] protoheme IX farnesyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.604618 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.308497 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTGGTCC CGGAGTGGGG CCCGATCATT CTGACCTCCC CCGCCCACGC CGGAAGGTGG
CAATCCGTGA GCATGATCAC CGAGCGCCCC GTTAGCGACC CGGCCGGGCA GTCGGTCAGC
GCGACGGGGG ATGGGGCGGT CGGCTCGCGG CGGGACATGC GGGCGGTGGT CGCGGCCTAC
GTGGCGTTGA CCAAGCCGCG GATCGTGGAG CTGCTGCTGG TCACCACCGT GCCGGCGATG
ATGCTCGCGC ACGGCGGTCT GCCGTCGCTC TGGCTGATGG CGGTGGTGTT GGTCGGTGGG
TCGTTGGCGG CCGGCGCGGC CAGCGTCCTG AACTGCTACA TCGACCGGGA CATCGATCAG
GTGATGCGGC GTACCAAGCG CCGCCCGCTG CCGGCGCACA CCGTCGCACC GCGGAACGCG
TTGATCTTCG GCCTGGTACT GGCGACGGTC TCGGTCACTC TGCTGGCCGT CTTCACCAAC
GCGCTGGCCG CCGGGTTGAC CCTGGCCGCG ATTCTGTATT ACGACCTGGT CTACACCGCC
TGGCTCAAGC GCACCACCAC GGCGAACACC TTCTGGGGTG GGGCCTGCGG GGCGGCGCCG
GTGTTGATCG GCTGGGCTGC GGTGACCGGC TCTCTCGCAC CGGCCGCGTG GGCGCTCTTC
GGGGTCGTCT TCTTCTGGCA GATGCCGCAC TTCTATCCGC TGGCGATGAA GTACAAGGAC
GACTACGCCC GCGCGGGCAT CCCGATGCTG CCGGTGGTGG CGTCAACCCG GCGGGTCAAC
GCCGAGATTC TCGTCTTCGC GTGGCTGACG GTGCTGGTGT CGCTGGTGAC CTGGCCGCTC
GGGGCCGGGA TGGGGCCGAT CTACGGGCTG CCGACCCTCG TCGTGGGGGT CATCTTCCTG
GTCGAGGCGC ACCGGCTCTG TCGTCGGGCG GCGCGGGGGG AGGCGGTCAA GCCCATGCGG
TTGTTCCACT GGTCCACCAC CTACCTGACC GTCGTTTTCG CGGCGGTTGC GCTGGACGCG
TTGATCTGA
|
|---|
| Protein sequence | MVVPEWGPII LTSPAHAGRW QSVSMITERP VSDPAGQSVS ATGDGAVGSR RDMRAVVAAY
VALTKPRIVE LLLVTTVPAM MLAHGGLPSL WLMAVVLVGG SLAAGAASVL NCYIDRDIDQ
VMRRTKRRPL PAHTVAPRNA LIFGLVLATV SVTLLAVFTN ALAAGLTLAA ILYYDLVYTA
WLKRTTTANT FWGGACGAAP VLIGWAAVTG SLAPAAWALF GVVFFWQMPH FYPLAMKYKD
DYARAGIPML PVVASTRRVN AEILVFAWLT VLVSLVTWPL GAGMGPIYGL PTLVVGVIFL
VEAHRLCRRA ARGEAVKPMR LFHWSTTYLT VVFAAVALDA LI
|
|---|
| |