Gene Strop_2727 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_2727 
Symbol 
ID5059190 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand+ 
Start bp3072970 
End bp3074046 
Gene Length1077 bp 
Protein Length358 aa 
Translation table11 
GC content62% 
IMG OID640474983 
Product4-hydroxyphenylpyruvate dioxygenase 
Protein accessionYP_001159549 
Protein GI145595252 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins 
TIGRFAM ID[TIGR01263] 4-hydroxyphenylpyruvate dioxygenase 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.000620471 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.914305 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCAACCG ATGACATAAC AGTCTTCGAC AACATGGTTC TCGACCACGT CAGCTTCTAC 
GCCGAGGACG CTTCAGCCGC CGCGAAATGG CTCGTTTCCG GGTACGGGTT CGCCGAGTAC 
GAGGACGATC GAGCCTTCAC CGGGTTCCCC GACGCCCGCT CGGTGGTCGT CGGCGTGAAT 
GATATCCGTT TCCGGATCAC ACAGCCTCTG GCTGACAGCC ATCCGGCCAA CCGCTACCTC 
ACCCGACACG GTGACGGAGT AGCCGACATT GCACTCCGGG TCCCGGACGC CACGGCTGCC 
TACCTGGCCG CGGTGCGACG TGGTGCGACA CCAGTGGCGG AGCCGACCGA GCGGGGCGGC 
CTGGTGACCG CGACCATCGG CGCTTTCGGC GACGTGACGC ACACTTTCGT GCAGGGCCGT 
GCTGGCATGA TCGGAGTGGT TCCGGCGGAA GGGCCGGGGA ACCGTCGCAG CACATCCGGT 
GCCGACGGTG AACTGGGCGA GATCGACCAC TTCGCGGTAT GCGTGTACGC CGGTGACCTG 
GACACGACCG TGTCATTCTA TCGGGATGTT CTGGACTTCG AACTGATCTT CGCTGAGCGG 
GTTCAGGTGG GGTCACAGGC AATGACCACC AAGGTGGTAC AAAGCCGTTC CGGTACCTTG 
ACCTTGACGT TGATCGAGCC AGACCTGAAC TGCGAGGCAG GCCATATCAA CGACTTCCTG 
ACCAATCACC GTGGACCAGG GGTACAGCAC ATCGCGTTCA CCGCGGAGTG TATCGTACAA 
GCTGTCGACG TGATCGGAGC ACGCGGGGTA GAGCTACTCT CCACGCCAGA TGCCTACTAT 
GCCGCACTAC CCGCCCGAAT GGACCTGGCC CGGTACACCG TTGACGAGCT GCGCAGTCGA 
AGCATTCTGG TGGACAGCGA CCATGACGGG CAGCTTTACC AGATTTTCAC CAAATCGGTG 
CACCCGCGGA ACACCATCTT CCTGGAGATC ATCGAGCGTC TCGGCGCTCG AGGCTTCGGC 
AGTGGCAACA TCAGGGCGTT GTATGAGGCG GTCGAGCGTA CGCGGGAGCA GGAATGA
 
Protein sequence
MSTDDITVFD NMVLDHVSFY AEDASAAAKW LVSGYGFAEY EDDRAFTGFP DARSVVVGVN 
DIRFRITQPL ADSHPANRYL TRHGDGVADI ALRVPDATAA YLAAVRRGAT PVAEPTERGG 
LVTATIGAFG DVTHTFVQGR AGMIGVVPAE GPGNRRSTSG ADGELGEIDH FAVCVYAGDL 
DTTVSFYRDV LDFELIFAER VQVGSQAMTT KVVQSRSGTL TLTLIEPDLN CEAGHINDFL 
TNHRGPGVQH IAFTAECIVQ AVDVIGARGV ELLSTPDAYY AALPARMDLA RYTVDELRSR 
SILVDSDHDG QLYQIFTKSV HPRNTIFLEI IERLGARGFG SGNIRALYEA VERTREQE