Gene Strop_2718 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_2718 
Symbol 
ID5059181 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp3061524 
End bp3063110 
Gene Length1587 bp 
Protein Length528 aa 
Translation table11 
GC content66% 
IMG OID640474974 
Productmajor facilitator transporter 
Protein accessionYP_001159540 
Protein GI145595243 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.571064 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.832187 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGACA CGATCCCGGC CAGGGCCGGG CGACGGGAAT GGATCGCGCT GGCCGTATTG 
GCCCTGCCGA CGTTGCTGGT CTCCATCGAC ATCTACAGCC TGCTCCTCGC GCTTCCCAAC
CTGACGGCGG ACCTGGGCGC GAGCAGCGTT CAGCAGCTCT GGATCACGGA CATCTACGTG
TTCATGCTAG CCGGGTTCCT GATCACGATG GGCACGCTCG GTGACCGTAT CGGTCGTAGG
AAGCTGCTAC TGATCGGAGC CGCAGCGTTC GGCGTCACAT CCGTCGTCGC GGCGTACTCC
GTCAGTCCCG AGATGCTGAT CGCCACCCGT GCCCTGCTCG GTGTGGCCGG TGCGATCCTG
GCACCGTCGA CCATGTCACT GATTCGCACC CTGTTCCGGG ATCCGAAGCA GATGGGATTG
GCGATCGGTA TCTGGGGGCT CTGCTTCTCG GCCGGCGCGG TGATCGGCCC GGTTGTCGGT
GGTGCACTGC TGTCCCACTT CTGGTGGGGC TCGGTCTTCC TGCTCGGAGT GCCGGCGATG
GTGCTGCTGC TTGCCGTCGG CCCAGCCCTG TTGCCCGAGT ACCGAGACCC GAACGCCGGC
GACCTGGATC TCATCAGCGT GGCGCTGTCA CTGGCTGCTG TACTACCGTC CATCTACGGG
CTCAAGGAGC TGGCGAAGAA CGGTTGGCAG GGAGTGCCGA TCGTTGCCAT CGTGATCGGG
ATCATCTTCG CTGTGCTCTT CGTCCGCAGG CAGCAGCGGC TCGAGAACCC GCTACTGGAC
CTGCGGCTGT TCGCAAGCCG GTCTTTCACC GTAGCGCTCA TCGGCCTGAT GTTCGGCACG
CTGCTGATGG GTTCGATCAT GCTGTTCGTC ACCCAGGATC TGCAGTTGGT AGAGGGCCTG
TCGCCGTTCG ATGCCGGCCT GTGGCTGCTG CCCGCCGTAC TGGCGAACGC GGTGTCGTTC
ATTGTGTCGC CCCTGCTTGC CCGCCGCTTC CGGCCGGCAC ACGTGATCGG CGTGGGTCTG
GCGATCTCCG TGTCTGGGCT GCTCGTGCTT ACTCAGACTG ACGCCATGTC GGGCCCCACC
ACCCTTGTGA CTGGGTTCAC ACTGGTCCTC TTCGGCGCTG GGCCCCTGGT GACGCTGGGC
ATTCAACTGA TCCTGGCCTC GGCGCCGGCG GAGAAGGCTG GTTCAGCTGC CGCCCTGAAC
GAAACCGGCG GCCAGTTCGG CTTCGCCTTC GGGCTTGCCG TGCTCGGCAG CATCGGTTTC
GCGGTGTATG ACAGCCGCTT CACCCCACCT GCTGATGTTC CCGCCGGCGC GGCCGATACC
GCACGGGAGA GCCTCGCCGA CGCAGTGGTT GTCGCGCGTG ACCTGCCTCC GGAGCAGGCC
GACGCCCTAC TCGCGTCGGC ACGGGAAGCG TTCGTCTTCG GGTTGCACCT AGTCAGTGCG
ATCAGCGCGG TGGTCCTCGC GGTCGTCGCC CTGCTGATCG TCCGGCTGCT ACGCGGGGTC
GCCCCGACCG GCACCGCGCC CGACGACGAG AGCGCCACGA ACGACGCCCC ACGCAGCGAG
GAGAAGCGTG CCATGCTGGG GGACTGA
 
Protein sequence
MNDTIPARAG RREWIALAVL ALPTLLVSID IYSLLLALPN LTADLGASSV QQLWITDIYV 
FMLAGFLITM GTLGDRIGRR KLLLIGAAAF GVTSVVAAYS VSPEMLIATR ALLGVAGAIL
APSTMSLIRT LFRDPKQMGL AIGIWGLCFS AGAVIGPVVG GALLSHFWWG SVFLLGVPAM
VLLLAVGPAL LPEYRDPNAG DLDLISVALS LAAVLPSIYG LKELAKNGWQ GVPIVAIVIG
IIFAVLFVRR QQRLENPLLD LRLFASRSFT VALIGLMFGT LLMGSIMLFV TQDLQLVEGL
SPFDAGLWLL PAVLANAVSF IVSPLLARRF RPAHVIGVGL AISVSGLLVL TQTDAMSGPT
TLVTGFTLVL FGAGPLVTLG IQLILASAPA EKAGSAAALN ETGGQFGFAF GLAVLGSIGF
AVYDSRFTPP ADVPAGAADT ARESLADAVV VARDLPPEQA DALLASAREA FVFGLHLVSA
ISAVVLAVVA LLIVRLLRGV APTGTAPDDE SATNDAPRSE EKRAMLGD