Gene Strop_2676 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_2676 
Symbol 
ID5059139 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp3011014 
End bp3012687 
Gene Length1674 bp 
Protein Length557 aa 
Translation table11 
GC content73% 
IMG OID640474932 
Product3-ketosteroid-delta-1-dehydrogenase 
Protein accessionYP_001159498 
Protein GI145595201 
COG category[C] Energy production and conversion 
COG ID[COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.0902529 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0264921 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCGATAT CGGAGGACGA ATTCGATGTT GTCGTCGTCG GCAGCGGCGG TGCCGGCATG 
GTCGCGGCAC TCGCCGCGGC GTACCGAGGG CTGAGTACGG TCGTGCTGGA GAAGGCCGGG
ACATACGGCG GTTCCACCGC TCGCTCCGGC GGTGGGCTCT GGCTTCCCGG TAACGAGGTG
CTGGCCCGGG CTGGGGTCGC CGACCGCGCT GAAAGCGCAC GCACCTACCT GGCGTACGTC
GCCGGCGCCG ACGCCACCCT GGCCCGGCAG AACGCGTTCC TCTCCGCCGC GCCGGAGGTT
GTCGCCTTCG TCCGTGCCCA CACCCCACTC GACTTCGCCT GGGTGCCCGG CTATCCGGAC
TACTACCCCG AGGCACCCGG CGGGCTTCCG GGCGGGCGCA GCATCGAGCC GCTCCTGCTC
GACACCCGGT TGGTCCGAGC TGACCTCGCG ACCTTGGCCG CGCCGTACAG GGCAACGCCG
GAGGGGGTGG CGGTCACCCA GGTCGACTAC CGGTGGCTGT CGCTGGGTCT CCGACATCCG
CGGGCGATCC GCACCGTGGC CCGGCTCGCC GCCCGCGGCC TGGGCGCCCG GATCCGGCGC
CGGCAGCTAC TCACCATGGG CCAGGCGCTC GCCGCCGGGC TCCGCGCCGG CCTGCGTCAC
GCCGGCGTCC CGGTCCGGCT CAACACACCG ATGACCGACC TCCTCGTCGA ACGGGGGCGG
GTCACCGGGG TTCACGCCAC GCATGTCGGC GCCCCGGTGC TGCTCCGCGC CCGGCGAGGT
GTACTGCTGG CCAGCGGCGG ATTTGAGCAC AACCAGCCGA TGCGCCAGAA GCACCAGGAG
GGGATCGGCA CGGAGTGGAC CGCCGGCGCG GCCGGCAACA CGGGCGATGG CATCGAGGCG
GGCGAACGGC TCGGCGCCGC CCTCGACCTG ATGGACGAGG CCTGGTGGGG GCCGTCGATT
CCGCTCCCCG GCGGGCCTTA CTTCTGCCTC GCCGAACGCA ACCAGCCCGG CTGTCTCATG
GTTGATGCCA ACGGCCAGCG CTTCGTCAAC GAAGCGGCAC CCTACGTGGA CGCGGTGCAC
GCCATGCGCA GCCCGGGTGT ACGCCAACCG GCGTGGTTGG TGGCCGACCA GACCTACCGG
GACCGCTACC TGTTCGCCGG GCGGGCCCCA CGCTCCCCGC TACCGCGGCA CTGGTTCACC
TCGGGGGCAG CGCACCGCGC CGACACGCTG GACAACCTGG CCACGCAGAT CGGCGTGCCC
GCGGCCGCGT TGGAAGACAC CATCCGCCGG TTCAACGAGT TCGCGCAGCG CGGTCGGGAC
GATGACTTCC ACCGCGGCGA CTCGGTCTAC GACCGCTACT ACGGCGACCC GCGGCATCGG
CCCAACCCGT GCCTGGGCAT CGTGGCCAGA CCCCCGTTCT ACGCATTCCG CATGGTCCCC
GGCGACCTGG GCACCAAGGG CGGCCTGCGT ACCGACGATC GAGCCCGGGT GCTGCGCCCG
GACGGCACGG TCGTTCCCGC GCTGTACGCG GCGGGCAACG TCAGCGCCTC GGTGATGGGG
CGCAGCTATG CCGGCGCCGG TGCGACCCTC GGCCCGGCCC TCGTCTTCGG CTACCTGGCG
GCACTCGACC TGGCCACGGC GGCCGCCACC CCCGCACCTA TCCAGGAGGA CTGA
 
Protein sequence
MSISEDEFDV VVVGSGGAGM VAALAAAYRG LSTVVLEKAG TYGGSTARSG GGLWLPGNEV 
LARAGVADRA ESARTYLAYV AGADATLARQ NAFLSAAPEV VAFVRAHTPL DFAWVPGYPD
YYPEAPGGLP GGRSIEPLLL DTRLVRADLA TLAAPYRATP EGVAVTQVDY RWLSLGLRHP
RAIRTVARLA ARGLGARIRR RQLLTMGQAL AAGLRAGLRH AGVPVRLNTP MTDLLVERGR
VTGVHATHVG APVLLRARRG VLLASGGFEH NQPMRQKHQE GIGTEWTAGA AGNTGDGIEA
GERLGAALDL MDEAWWGPSI PLPGGPYFCL AERNQPGCLM VDANGQRFVN EAAPYVDAVH
AMRSPGVRQP AWLVADQTYR DRYLFAGRAP RSPLPRHWFT SGAAHRADTL DNLATQIGVP
AAALEDTIRR FNEFAQRGRD DDFHRGDSVY DRYYGDPRHR PNPCLGIVAR PPFYAFRMVP
GDLGTKGGLR TDDRARVLRP DGTVVPALYA AGNVSASVMG RSYAGAGATL GPALVFGYLA
ALDLATAAAT PAPIQED