| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_2614 |
|---|
| Symbol | |
|---|
| ID | 5059077 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 2935456 |
|---|
| End bp | 2936247 |
|---|
| Gene Length | 792 bp |
|---|
| Protein Length | 263 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640474870 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_001159436 |
|---|
| Protein GI | 145595139 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGCCCC CGGGGCCGCC GCCGGTCCGC CCGGCCGGTC GGGAGTTGCT CGCGGAGAAG
GTCGTGGTGG TGACCGCGGC GGCGGGGACC GGGATCGGGG CGGCCGTGGT GGAACGCTGC
CTGGACGAGG GTGCGTTCGT CATGATCAGC GACCAGCATG TCCGGCGGCT CGCCGAGAGC
CACGATCGGC TCTCGGCTGA CTATCCGGGC CGGGTTCGGT CAATGCCCTG CGACGTAACC
GACGAGCAGG CAGTCGCGGC GTTGGTCAAC GCCGCCGTGG CTGGCTACGG ACGGCTGGAC
GTCATGATTA ACAACGCCGG GCTCGGCGGT ACGGCGTCGG TCATGGAGAT GGCCGACGAC
GAGTGGTCGC GGGTGCTGGA CGTGACGCTA ACCGGCACGT TCCGTTGTAC GCGGGCAGCG
GTACGGCAGA TGCTGGTGCA GGGCCACGGT GGTGTGGTGG TCAACAATGC GTCGGTGCTG
GGCTGGCGGG CCCAGGCCGG TCAGGCGCAC TATGCGGCTG CCAAGGCGGG GGTGATGGCG
TTCACCCGGT GCGCGGCGCT GGACGCGGCA CCCTACGGCA TCCGCGTGAA CGCCGTGGCG
CCCAGCCTCG CCATGCACCC CAACCTGTCG AAGGTGACCA GTGCGGACCT GCTCGCCGAG
CTTTCCGACC AGGAGGCGTT CGGCCGTGCG GCGCAGCCGT GGGAGGTCGC GGCCGTCATG
GCCTTCCTCG CCAGCGACTA CGCCTCGTAC CTCACCGGTG AGGTGGTGTC GGTCAGTAGC
CAGCATCCGT GA
|
|---|
| Protein sequence | MRPPGPPPVR PAGRELLAEK VVVVTAAAGT GIGAAVVERC LDEGAFVMIS DQHVRRLAES
HDRLSADYPG RVRSMPCDVT DEQAVAALVN AAVAGYGRLD VMINNAGLGG TASVMEMADD
EWSRVLDVTL TGTFRCTRAA VRQMLVQGHG GVVVNNASVL GWRAQAGQAH YAAAKAGVMA
FTRCAALDAA PYGIRVNAVA PSLAMHPNLS KVTSADLLAE LSDQEAFGRA AQPWEVAAVM
AFLASDYASY LTGEVVSVSS QHP
|
|---|
| |