Gene Strop_2611 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_2611 
Symbol 
ID5059074 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp2931245 
End bp2932876 
Gene Length1632 bp 
Protein Length543 aa 
Translation table11 
GC content67% 
IMG OID640474867 
Productcholesterol oxidase 
Protein accessionYP_001159433 
Protein GI145595136 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2303] Choline dehydrogenase and related flavoproteins 
TIGRFAM ID[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAGGTA CGAGCCTTTC CCGACGTGGC CTGCTAAGGG CCACCACGCT CGGCGCCGGC 
GTCGCCGTCG CTGGGGTCGC ACTAGGCCAG CAGGCGGCCC AGGCGGGTGG TCCGGTACCC
GCGTTGGCCG GGAAGACCGC CGTGGTCATC GGCAGTGGCT TCGGCGGGGC GGTCGCCGCT
TACCGACTCG GCCAGGCCGG AGTGGTGACC ACGGTGTTGG AACGAGGTCG CCGCTGGGAC
GTGGACGGCT CCGGCAACAC GTTTTGCAGC ATCAATGAGC CCGACTGGCG GTGTGGCTGG
TTCCTGGACC GCCCGCCATT GGGAATCAAC CTCGGCGCGA GGATCGAACA ACGGGCCGGG
TTGATCGCCC GACACGACGG AGATGGAATC TCGGTGCTGA GCGGAACCGG AGTTGGCGGC
GGCTCCCTCG CCATCGGGAT GTTCCTACCG CAGCCGCGGC GCAGCGAGTG GGAGCAGGTG
TATCCGACCG AGGTCGGATA CGACGAGATG AACGATGTCT ACTGGCCACG GGCCCGGCAA
CGCCTCGGTG CGACGCCAAT TCCCGAGGAT GTGCAGAGCA CCGGCCCCTA CCGGGGAGCC
CGAGCCTGGC TCGACTACCT GTCCGAGTTC AAGCAGACCC CCCTCCCCAT TCCGTTCGCC
GTCGACTGGG ACGTGATCCG CGCCGAGCTC GCCGGTGACA CCGTGCCGTG CCACACGATC
GGTGAGGGCC CGTACGGCAG CAACTCCGGG GCGAAGAACA GCGTGGACCG CAACTACCTC
GCCTGGGCCG CTGCGACCGG CAACGTGACC ACACTGGCGT TGCACGAGGT CACCGAGATC
CATGAGGTGT CCGGTCAGGA CAAGTTCGAG ATCCGGTGCC GACAGATCGA CGAGCACGGC
TCGGTCCTCT CCACGAAGAC CTTCGTCTGC GACTACCTGT TCATGGCCGC CGGCTCCGTC
TACACCACCT CCCTGCTGCT CACCTCCCAG GCCAAGGGCT GGCTTCCCCG CCTGGTCAAC
CAGGAGGTGG GCAAGGGCTG GGGCAACAAC GGCGACTTCC TGGTGACCCG GATCAACCTG
CGAAAGGACG TCGGCTACGC CCAGGGCGGT CCGGGTAACG TCAAGTACAT CGACGAGGAC
AACCCGTACG CACCCACCTC GATGGCGTGG GAGGCAGCAC CTGTCCCCCG TTGGATGCCG
CGTACCACGG CGCACCTGGT GACCAGCATG ACTCCGGAAC GTGGCGAGAT TCGCTACGAC
GCGGCGACCG GGGCCGGTAA GGTGCACTGG CCGTACGGGA CGCTGGAGAC CACCTCCGAG
AAGGCGGCGG TGAACCTGGT TACCCGGTTG TGGTGGCAGA CCGAAGGCCG CAAGGGATAC
CTCCTGCACG GTCTGCCGAC CTACGCCCGG GGTGTCGGCA CCGGGCTCGG TGCCGCGAAC
ACCTGGCATC CGCTGGGCGG CATGGTTATG GGCAAGGCCA CCGACTTCGA CGGTCGATGC
GTCGACTACC CCAACCTCTT CTGCATCGAC GGATCGCTCC TGCCGGGGTC AACCTGCCTG
GCAAACCCTT CGCTGACCAT CACCGCGAAC GCCGAACGCT GCATGGACCG GTTCGTCGCC
GCGCACTCCT GA
 
Protein sequence
MTGTSLSRRG LLRATTLGAG VAVAGVALGQ QAAQAGGPVP ALAGKTAVVI GSGFGGAVAA 
YRLGQAGVVT TVLERGRRWD VDGSGNTFCS INEPDWRCGW FLDRPPLGIN LGARIEQRAG
LIARHDGDGI SVLSGTGVGG GSLAIGMFLP QPRRSEWEQV YPTEVGYDEM NDVYWPRARQ
RLGATPIPED VQSTGPYRGA RAWLDYLSEF KQTPLPIPFA VDWDVIRAEL AGDTVPCHTI
GEGPYGSNSG AKNSVDRNYL AWAAATGNVT TLALHEVTEI HEVSGQDKFE IRCRQIDEHG
SVLSTKTFVC DYLFMAAGSV YTTSLLLTSQ AKGWLPRLVN QEVGKGWGNN GDFLVTRINL
RKDVGYAQGG PGNVKYIDED NPYAPTSMAW EAAPVPRWMP RTTAHLVTSM TPERGEIRYD
AATGAGKVHW PYGTLETTSE KAAVNLVTRL WWQTEGRKGY LLHGLPTYAR GVGTGLGAAN
TWHPLGGMVM GKATDFDGRC VDYPNLFCID GSLLPGSTCL ANPSLTITAN AERCMDRFVA
AHS