| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_2295 |
|---|
| Symbol | |
|---|
| ID | 5058758 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 2590339 |
|---|
| End bp | 2591940 |
|---|
| Gene Length | 1602 bp |
|---|
| Protein Length | 533 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640474557 |
|---|
| Product | integral membrane protein MviN |
|---|
| Protein accession | YP_001159123 |
|---|
| Protein GI | 145594826 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0728] Uncharacterized membrane protein, putative virulence factor |
|---|
| TIGRFAM ID | [TIGR01695] integral membrane protein MviN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGAAG GATCTTCCAT CGGAAGCGCG GGCCGCGCCA TGGCGGTGGC GACGTTGGTG
TCACGGGCCG CCGGTTTCGT CCGTCTGGTG GTGCTGGCCT CCGCCCTGGG AATGGGGAGC
CGTCTGCTCG ACGGCTACAA CGTGGCGAAC ACGCTGCCCA ACGCCGTCTA CGAGCTTGTC
GTCGGCGGCG CGATGGCCAG CGTGGTGGTG CCGCTGCTGG TGCGTGCCGC ACTGACCGAA
CCCGATGCCG GGATGGTCTA CACCCAGCGG CTACTGTCGT TGCTGGTCTA CGGGCTCGGG
GCAGTCACTC TGGTGGCAAT GATCTCAGCC CCGTGGCTGG TCGCGGTCTA TGCGCCGGGT
TTTTCCGGCG AGCAGCACGA CCTGGCGGTG TTACTCAGCC GGTTCTTTCT GCCCCAGATC
CTGTTCTATG GCCTCAGTGC CACCGCCGGC GCGGCGCTCA ACATCCGGGG CCGGTTCGCC
GTTCCGATGT GGGCGCCGGT TGTCAACAGC CTGGTCGTGA TCGCTGTCGG GATGACCTAC
CTGGCCGTCG GCGGCACCAC CAGCATTACG TCGATGCCCG CCGGACATCT GCTGTTGCTC
GCCGTGGGCA CCACCGCGGG CGTCTTCGCC CAGATGACCC TGGTGGTGTG GGCCCTGGCG
CGCAGCGGCT TCACCCTTCG GCCCCGACTC AACCCACGGG GCATCGGGAT CCGGCGAATC
GGCCGGCTCG GCGCCTGGGT CCTCGTGTCG GTCGTCGCCG CGCAGATCCT GCTCGCAGTG
GCCACCCGAG TCGCCTCGAC GAGCGGACCG GGCGGGGTCA GCGCCTTCCA GAACGCGCTC
GCGGTGTTCC AGATGCCGTT CGCGGTGATC GCCATGTCGG TGATGACCGC GATGCTGCCC
CGGCTCAGTC GCCACGCCGC CGGCCGCCAG CACGCCCAGA TCGTCGAGGA CCTGTCCCAG
GCGGTCCGGC TGGCGGTCGT GGCACTCGCC CCGATCGCGG TGGCCATGAC GGTGCTCGGC
CCGCAGCTCG CCACGCTGTT GTTCGGCTAC GGCCGCAGTT CACCGTCGGC GATCGCCCTG
CTGGGCGCGG TGGTGGCAGC CTTCGGGGTG GCCCTGGTGC CGTTCACCGG CTTCATGATT
CTGCAACGCG GGTTCTACGC CCTCCAGGAC ACCAGGACCC CCGCGATTGT CACCGTCGGG
GTCACCGTCG TCGGCGTGGC CGGATGCGTC GCCGCGACAT GGCTACTACC CCGCGCCAAC
GCCGTGATCG GGGTTCCCCT CGCGTACGCG GTCGCCTACA CGGCGGGCCT CGCCGCCGCT
GCCCTTCTCC TGCGCCGTCG GCTGGGACGA ATCGACGGGC ACCGACTGCT TCGTACGGCC
GCTCGGGTAA CGGTCGCCGT CGGCGTCTCC GGCAGCTGCG GCGGTCTCAC GGTCTACGCC
CTCACGCCGC TGCTCGACTC CCAGGACAAT GCTGCGCTGA TCACATTGAC CGTGGCGGGC
GCCATCGGCT GTGCCGTCTA CGTTGCGGTC GCCCGCCTGG TGCACCTCAC CGAGCTGCGC
CAACTCGTGG CAACAGCCCT GGCCGGCATC CGACCCGGCT GA
|
|---|
| Protein sequence | MAEGSSIGSA GRAMAVATLV SRAAGFVRLV VLASALGMGS RLLDGYNVAN TLPNAVYELV
VGGAMASVVV PLLVRAALTE PDAGMVYTQR LLSLLVYGLG AVTLVAMISA PWLVAVYAPG
FSGEQHDLAV LLSRFFLPQI LFYGLSATAG AALNIRGRFA VPMWAPVVNS LVVIAVGMTY
LAVGGTTSIT SMPAGHLLLL AVGTTAGVFA QMTLVVWALA RSGFTLRPRL NPRGIGIRRI
GRLGAWVLVS VVAAQILLAV ATRVASTSGP GGVSAFQNAL AVFQMPFAVI AMSVMTAMLP
RLSRHAAGRQ HAQIVEDLSQ AVRLAVVALA PIAVAMTVLG PQLATLLFGY GRSSPSAIAL
LGAVVAAFGV ALVPFTGFMI LQRGFYALQD TRTPAIVTVG VTVVGVAGCV AATWLLPRAN
AVIGVPLAYA VAYTAGLAAA ALLLRRRLGR IDGHRLLRTA ARVTVAVGVS GSCGGLTVYA
LTPLLDSQDN AALITLTVAG AIGCAVYVAV ARLVHLTELR QLVATALAGI RPG
|
|---|
| |