| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_2122 |
|---|
| Symbol | |
|---|
| ID | 5058585 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 2399429 |
|---|
| End bp | 2400595 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640474385 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_001158951 |
|---|
| Protein GI | 145594654 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.469817 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0155235 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACA ACGTACCGGC CGGTCCCCTG GCCGATGTGC GGGTGATCGA GCTGGCCGGG
ATCGGGCCGG GGCCATTCGC CGCGATGATG CTGGCCGACC TCGGCGCCGA GGTGATCCGG
GTGGATCGGG CGGCCGACGT GGACCCGACC GCTTTCGGCG GCCCCCACCC CGATCTCCTG
AACCGGGGAC GGCGATCAAT TGGTGTAGAC CTGAAGTCAC CCCCCGGCCG CGACGTGGCA
CTCGCTCTGA CCGCCGGCGC CGATGTGCTG ATCGAGGGCT TTCGGCCCGG CGTGACCGAG
CGACTCGGCC TCGGCCCGGC GGATTGCCAC GCGGTCAACC CACACCTCGT GTACGGGCGG
ATGACCGGCT GGGGGCAGCA CGGTCCCAGC GCACCGGAGG CGGGGCACGA CATCGCCTAC
CTGGCCTTGA CCGGAGCGCT GCACGGTATA GGACGGGCCG GCGAGCGTCC GGTGCCGCCG
CTGAACCTGC TCGGCGACTT CGGTGGCGGC GGGATGCTTC TAGCTCTCGG CCTGGTCAGC
GCCCTGTACG CGGTGCGCGG CGGCGCCGCC GGCCAGGTGG TGGACGCCGC GATCGTGGAC
GGTGTCTCGG TGCTCAGCAC TCAGATCCAC GCCCTGCGCC ACCTCGGCAG GTGGCGGGAC
CCACGCGGGG TAAACCTGCT CGACGGGGGC GCACCGTTCT ACGACAGCTA CGAGTGTGCC
GACGGAAAGC ATCTCGCGGT GGGCGCGCTG GAGCCCCGCT TCTACGACGA ACTGGTCCGG
CGCACCGGCT TTCCGCTGCC GGGAGACACC GCTCTGGACC GTACCGACCC GGAGAACTGG
CCGGCGCTGC GGGAGGCGTG GGCACGGCTG TTCCGGACCC GGACCCGAGA CGAGTGGGCG
ACACTGTTCA CCGGCTCGGA CGCCTGCGTG GCCCCGGTTC TGGACTGGAC GGAGGCGCCG
GTACACCCGC ACCTGGCGGC GCGGGAGACG TTCGTGGAGC ACCACGGGGT GACCCAACCA
GCGCCCGCAC CACGCTTCTC CGGCACGCCG ACGGCCCTGC ACCGTCCACC GCCGCACCCC
GGCGAACACA CCGACGAGCT ACTGGCCGAG GCGGGCTTCG GAGCAGACCG TATCGCCGAC
CTGCACGCTG CGGGCGCCGT CGCCTAG
|
|---|
| Protein sequence | MTDNVPAGPL ADVRVIELAG IGPGPFAAMM LADLGAEVIR VDRAADVDPT AFGGPHPDLL
NRGRRSIGVD LKSPPGRDVA LALTAGADVL IEGFRPGVTE RLGLGPADCH AVNPHLVYGR
MTGWGQHGPS APEAGHDIAY LALTGALHGI GRAGERPVPP LNLLGDFGGG GMLLALGLVS
ALYAVRGGAA GQVVDAAIVD GVSVLSTQIH ALRHLGRWRD PRGVNLLDGG APFYDSYECA
DGKHLAVGAL EPRFYDELVR RTGFPLPGDT ALDRTDPENW PALREAWARL FRTRTRDEWA
TLFTGSDACV APVLDWTEAP VHPHLAARET FVEHHGVTQP APAPRFSGTP TALHRPPPHP
GEHTDELLAE AGFGADRIAD LHAAGAVA
|
|---|
| |