| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_2109 |
|---|
| Symbol | |
|---|
| ID | 5058572 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 2384665 |
|---|
| End bp | 2385516 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640474372 |
|---|
| Product | transcription activator, effector binding |
|---|
| Protein accession | YP_001158938 |
|---|
| Protein GI | 145594641 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0789] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.309412 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0724645 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGTCAG GGCCGACCGT GGAGGGACCC TGTTCACCAT CGGAGACTTC GCCAGGCTTG
GTCGGGTATC GGTGGATGCT GCGACACTAT GACAACATCG GCCTGCTCCG GCCGGTCGCT
GTCGACGCAC GCAGCGGCTA TCGGTACTAC ACCGCCGACC AGCTGCGCCG GCTCAACCGG
GTGATCGCGC TGAAGGACCT CGGTCTCACT CTGGCCCAGG TACAGCTGGT CCTTGACGAT
GTGTTGGATG CCGCGGAGTT GCGCGGCCTG CTGCGGCTGC GCCGTGCCCA GCTGGAGGCG
CAGCTTGCCG CGGACACCAC CCGGTTGACC CGGATCGAGG CGAGGCTTCG GGCGATAGAC
AGAGAGGGTC GGATGACCAC GCAGGATGTC GTGCTCAAGG AGCTACCGTC GCTCCGCGTC
GCGGAGTTGA CAGCAATGGC GGCCAGCTAC GAAACCGCTG ACATCGGTCG GGCGATCCGG
CCGCTCTACC CGGAGTTGCT CCGGCGGCTG GCCGTGGCGG AGGTGTCGCT GAGCGGGCCC
AGCCTGGCCT ATTACGAGCC GGCCGGGGAC GGGGAGAAGA TTGTGGTGCA CGCCGGCCTC
GAGGTCGCGG TCAGCCCGGA TCGGGCGCGG GACTTCGCGG TCGTCGACCT GCCGGCGGTG
CCGGCAGCGG CCACGGTTAT TCACCGCGGG CCGATGGATG AGGTCGCGGG CACCCTGCAG
CTGCTGGCTC AGTGGATCGA GGAAAACGGC TGGCGGGCCG AGGGCTACGC CCGCGAGCTG
TACGTGGAGT ACTGCGCCGA TGACCCCGCG GCCGGGGTGA CGGAGCTGCA GCAACCAGTG
ACGCGAGCCT GA
|
|---|
| Protein sequence | MVSGPTVEGP CSPSETSPGL VGYRWMLRHY DNIGLLRPVA VDARSGYRYY TADQLRRLNR
VIALKDLGLT LAQVQLVLDD VLDAAELRGL LRLRRAQLEA QLAADTTRLT RIEARLRAID
REGRMTTQDV VLKELPSLRV AELTAMAASY ETADIGRAIR PLYPELLRRL AVAEVSLSGP
SLAYYEPAGD GEKIVVHAGL EVAVSPDRAR DFAVVDLPAV PAAATVIHRG PMDEVAGTLQ
LLAQWIEENG WRAEGYAREL YVEYCADDPA AGVTELQQPV TRA
|
|---|
| |